Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4304g00015 ATGGCCATTTCTGCGTTATTCTTGGTTGTGCTGCTGCAATTGTCAACAATTTTTGGCTCGGAGGTTGTCCTACAGTCAAAGGAATGTGGCACTGATTGGGTGGCACATTCATATTCTAGTCATGGTCAGGAACTTTTCTACATAAACGGCAATGTAGTGGACAAGGTTGCTTTCTGTGAGGCTCTCCAATCGTATACTGAAAAGGGGTGTGATGTGAAGGACTACTTTGGAAGTGTCAAATGTCTGACGGATGTTTCTTTTGTGGATTTTCCTTTAAAGGCAGGGAGGAAACTTCTTAAAAAGGATTCAAATACCGAATCTAAACCGCAAGGAGAATCTAAGCCTCTCGCAGCCCACGTGGTTGGTATTTCTGCAGGGGGTGCTCTGTTTGCATGTTGTCTTGTTCTTTGTCCTTGTTTCTTTAAGAGAAGGAAAGCAACTTCTCATGCTGTTCTGAGCAAGGACCCCAATTCAATGGATTCCGTGTCCTCCTTTGAAGCCTCCGTTAATGACAAGATTCCGGCCAGTCCACTACGAGTGCCAGCTAGTCCGTCAAGATTCTCAATGTATCCAAAACTCAGTAGACTTCAATCATTGCATCTCGATCTGAACCAAGTTACAAGAGCTACTCATAACTTCTCAGAAACATTGCAAATAGGAGAAGGGGGTTTTGGAACTGTCTACAAGGCCAAGTTGGAAGATGGTCTGGTCGTGGCTGTAAAACGTGCAAAAAAGGAACATTTTGATAGTTTGAGGGCAGAATTCAGCAGTGAAGTTCAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAATGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGCATGCGTGGAAAAACACTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTACATCTGTATGCAGAAAAGCAAATTATCCATCGAGACGTGAAATCATCCAACATTCTGCTGACAGAAAGCATGCGAGCAAAAGTTGCTGATTTTGGATTTGCAAAGCTAGGGCCTGTAAACACTGATGAGACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTCCCAAGAGTGACGTTTATTCGTTTGGAATTTTGCTTTTAGAAATCGTATCTGGCCGCCGTCCCGTTGAGTTGAAGAAATCTGTTGAAGAGCGTGTTACACTTAGATGGGCCTTCAAGAAGTACAACGAAGGAAGTGTAGTGGAACTGGTGGATCCTTTAATGGAAGAAGCAGTAAACACAGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCATTCGAGCAGATAGACCTGACATGAAATCGGTGAGCGAGCAGTTGTGGGCAATAAGGGCTGATTACCTCAAGAGTGCAAGGAGAACATGA 1500 0.43 MAISALFLVVLLQLSTIFGSEVVLQSKECGTDWVAHSYSSHGQELFYINGNVVDKVAFCEALQSYTEKGCDVKDYFGSVKCLTDVSFVDFPLKAGRKLLKKDSNTESKPQGESKPLAAHVVGISAGGALFACCLVLCPCFFKRRKATSHAVLSKDPNSMDSVSSFEASVNDKIPASPLRVPASPSRFSMYPKLSRLQSLHLDLNQVTRATHNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRAEFSSEVQLLAKIDHRNLVKLLGYIDKGNERLLITEFVPNGTLREHLDGMRGKTLDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNTDETHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVSGRRPVELKKSVEERVTLRWAFKKYNEGSVVELVDPLMEEAVNTDVLMKMFDLAFQCAAPIRADRPDMKSVSEQLWAIRADYLKSARRT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4304g00015 499 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 100 490 - -
Vium4304g00015 499 ProSiteProfiles Protein kinase domain profile. 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4304g00015 499 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
Vium4304g00015 499 CDD STKc_IRAK 219 485 - -
Vium4304g00015 499 Gene3D Transferase(Phosphotransferase) domain 1 290 498 - -
Vium4304g00015 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 290 499 - -
Vium4304g00015 499 SUPERFAMILY Protein kinase-like (PK-like) 195 488 IPR011009 -
Vium4304g00015 499 Pfam Protein tyrosine and serine/threonine kinase 218 485 IPR001245 GO:0004672|GO:0006468
Vium4304g00015 499 SMART serkin_6 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4304g00015 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Vium4304g00015 499 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
Vium4304g00015 499 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 185 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4304g00015 Vium-Chr4304 98108 105343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4304g00015 198 488 Receptor kinase-like Gene Family AT5G59700 46.918 8.36e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vium4304g00015 PK_Tyr_Ser-Thr 2.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4304g00015 - - gmx:100798260 873.618