LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4304g00014	ATGTCAACAAACCACCTCAGGAATGGAGACTCCGAACCTCTCCTTCGTCAAACTCTACTGTCTTCTTCACAGAGATCCATTGTCAACTCCACATCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCGATTGAGAGCCTCGATTATGAGATTTTTGAGAACGAGTTCTTCAAGCAAGATTGGAGGAGCAGAGGAAAGGCTCAGATATTTCAGTACATTTTTATGAAGTGGCTCTTGTGCTTTCTCGTTGGCATGATCGTTAGCCTCATTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACCTCCAATATGATGTTGGAGAAGAGGTTCCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGCTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTGATAGCACCTGCGGCCACAGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGACGCACCTGGAATATTTACTGTGCAAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCCGCATTATTTGGTCAGGGTGGGTCAAAGAGATATGGGCTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACCTGTGGATCAGCTGCTGGAATGGCTGCTGCTTTCCGCGCCCCTGTTGGTGGTGTGTTGTTTGCTTTGGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCGAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGTTACTTGGCAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATTTCCATTTGTACATCCTTCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGCCCACCTAATCCAAGTGAACCTTGTCCTACAATCGGCCGGTCTGGTATCTACAAAAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGACGAGTTTGAGTTGACATCAATGCTAATTTTTTTCGTTACATGCTTTTTGTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCGTCATTGGAATGCTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTATGCTGTACTGGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTATTGCTACCCTTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATAGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGAGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATATCCTCACCTGGGGCAACCAGTGGCGCCGTCTTTGATAATTTTGCAGCCAATGATTTTGCAAAGAAGGGTTCAAGCAATGTTCGTCTAAAAATAGAAGATATAGAGTTGTCGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCAGAACATATTTTGGGTTTGCATCCCTTTTTGGTAAGAAACGCAGGGAAAATACTAAGATTTTAG	2301	0.4229	MSTNHLRNGDSEPLLRQTLLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKAQIFQYIFMKWLLCFLVGMIVSLIGFCNNLAVENLAGIKFVVTSNMMLEKRFQLAFFIFFVSNLALTLFASLITALIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALFGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISICTSFLLFGLPWFTSCRPCPPNPSEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFELTSMLIFFVTCFLLSIFSYGVVAPAGLFVPVIVTGASYGRVIGMLLGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPELFGIILRDHLLTLLKKKAFISSPGATSGAVFDNFAANDFAKKGSSNVRLKIEDIELSEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSRSPVVGILTRHDFIPEHILGLHPFLVRNAGKILRF	766

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4304g00014	766	PRINTS	Plant CLC chloride channel signature	275	285	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Vium4304g00014	766	PRINTS	Plant CLC chloride channel signature	293	300	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Vium4304g00014	766	PRINTS	Plant CLC chloride channel signature	417	433	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Vium4304g00014	766	PRINTS	Plant CLC chloride channel signature	50	58	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Vium4304g00014	766	PRINTS	Plant CLC chloride channel signature	261	269	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Vium4304g00014	766	SUPERFAMILY	Clc chloride channel	54	568	IPR014743	-
	Vium4304g00014	766	SUPERFAMILY	CBS-domain pair	569	745	IPR046342	-
	Vium4304g00014	766	FunFam	Chloride channel ClC3	68	385	-	-
	Vium4304g00014	766	PANTHER	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	21	751	-	-
	Vium4304g00014	766	Gene3D	-	567	746	IPR046342	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4304g00014	Vium-Chr4304	92907	97886	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4304g00014	8	765	Ion Channels	AT5G33280	73.747	0.0	1112

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4304g00014	K05016		-	gmx:100817901	1290.4

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