Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4304g00014 ATGTCAACAAACCACCTCAGGAATGGAGACTCCGAACCTCTCCTTCGTCAAACTCTACTGTCTTCTTCACAGAGATCCATTGTCAACTCCACATCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCGATTGAGAGCCTCGATTATGAGATTTTTGAGAACGAGTTCTTCAAGCAAGATTGGAGGAGCAGAGGAAAGGCTCAGATATTTCAGTACATTTTTATGAAGTGGCTCTTGTGCTTTCTCGTTGGCATGATCGTTAGCCTCATTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACCTCCAATATGATGTTGGAGAAGAGGTTCCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGCTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTGATAGCACCTGCGGCCACAGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGACGCACCTGGAATATTTACTGTGCAAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCCGCATTATTTGGTCAGGGTGGGTCAAAGAGATATGGGCTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACCTGTGGATCAGCTGCTGGAATGGCTGCTGCTTTCCGCGCCCCTGTTGGTGGTGTGTTGTTTGCTTTGGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCGAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGTTACTTGGCAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATTTCCATTTGTACATCCTTCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGCCCACCTAATCCAAGTGAACCTTGTCCTACAATCGGCCGGTCTGGTATCTACAAAAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGACGAGTTTGAGTTGACATCAATGCTAATTTTTTTCGTTACATGCTTTTTGTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCGTCATTGGAATGCTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTATGCTGTACTGGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTATTGCTACCCTTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATAGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGAGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATATCCTCACCTGGGGCAACCAGTGGCGCCGTCTTTGATAATTTTGCAGCCAATGATTTTGCAAAGAAGGGTTCAAGCAATGTTCGTCTAAAAATAGAAGATATAGAGTTGTCGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCAGAACATATTTTGGGTTTGCATCCCTTTTTGGTAAGAAACGCAGGGAAAATACTAAGATTTTAG 2301 0.4229 MSTNHLRNGDSEPLLRQTLLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKAQIFQYIFMKWLLCFLVGMIVSLIGFCNNLAVENLAGIKFVVTSNMMLEKRFQLAFFIFFVSNLALTLFASLITALIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALFGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISICTSFLLFGLPWFTSCRPCPPNPSEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFELTSMLIFFVTCFLLSIFSYGVVAPAGLFVPVIVTGASYGRVIGMLLGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPELFGIILRDHLLTLLKKKAFISSPGATSGAVFDNFAANDFAKKGSSNVRLKIEDIELSEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSRSPVVGILTRHDFIPEHILGLHPFLVRNAGKILRF 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4304g00014 766 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4304g00014 766 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4304g00014 766 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4304g00014 766 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4304g00014 766 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4304g00014 766 SUPERFAMILY Clc chloride channel 54 568 IPR014743 -
Vium4304g00014 766 SUPERFAMILY CBS-domain pair 569 745 IPR046342 -
Vium4304g00014 766 FunFam Chloride channel ClC3 68 385 - -
Vium4304g00014 766 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 21 751 - -
Vium4304g00014 766 Gene3D - 567 746 IPR046342 -
Vium4304g00014 766 Pfam CBS domain 696 745 IPR000644 -
Vium4304g00014 766 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 747 - -
Vium4304g00014 766 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 ProSiteProfiles CBS domain profile. 695 755 IPR000644 -
Vium4304g00014 766 Pfam Voltage gated chloride channel 133 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4304g00014 766 Gene3D Clc chloride channel 68 566 - -
Vium4304g00014 766 SMART cbs_1 586 639 IPR000644 -
Vium4304g00014 766 SMART cbs_1 698 749 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4304g00014 Vium-Chr4304 92907 97886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4304g00014 8 765 Ion Channels AT5G33280 73.747 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4304g00014 K05016 - gmx:100817901 1290.4