Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4304g00014 | ATGTCAACAAACCACCTCAGGAATGGAGACTCCGAACCTCTCCTTCGTCAAACTCTACTGTCTTCTTCACAGAGATCCATTGTCAACTCCACATCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCGATTGAGAGCCTCGATTATGAGATTTTTGAGAACGAGTTCTTCAAGCAAGATTGGAGGAGCAGAGGAAAGGCTCAGATATTTCAGTACATTTTTATGAAGTGGCTCTTGTGCTTTCTCGTTGGCATGATCGTTAGCCTCATTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACCTCCAATATGATGTTGGAGAAGAGGTTCCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGCTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTGATAGCACCTGCGGCCACAGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGACGCACCTGGAATATTTACTGTGCAAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCCGCATTATTTGGTCAGGGTGGGTCAAAGAGATATGGGCTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACCTGTGGATCAGCTGCTGGAATGGCTGCTGCTTTCCGCGCCCCTGTTGGTGGTGTGTTGTTTGCTTTGGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCGAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGTTACTTGGCAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATTTCCATTTGTACATCCTTCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGCCCACCTAATCCAAGTGAACCTTGTCCTACAATCGGCCGGTCTGGTATCTACAAAAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGACGAGTTTGAGTTGACATCAATGCTAATTTTTTTCGTTACATGCTTTTTGTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCGTCATTGGAATGCTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTATGCTGTACTGGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTATTGCTACCCTTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATAGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGAGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATATCCTCACCTGGGGCAACCAGTGGCGCCGTCTTTGATAATTTTGCAGCCAATGATTTTGCAAAGAAGGGTTCAAGCAATGTTCGTCTAAAAATAGAAGATATAGAGTTGTCGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCAGAACATATTTTGGGTTTGCATCCCTTTTTGGTAAGAAACGCAGGGAAAATACTAAGATTTTAG | 2301 | 0.4229 | MSTNHLRNGDSEPLLRQTLLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKAQIFQYIFMKWLLCFLVGMIVSLIGFCNNLAVENLAGIKFVVTSNMMLEKRFQLAFFIFFVSNLALTLFASLITALIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALFGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISICTSFLLFGLPWFTSCRPCPPNPSEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFELTSMLIFFVTCFLLSIFSYGVVAPAGLFVPVIVTGASYGRVIGMLLGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPELFGIILRDHLLTLLKKKAFISSPGATSGAVFDNFAANDFAKKGSSNVRLKIEDIELSEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSRSPVVGILTRHDFIPEHILGLHPFLVRNAGKILRF | 766 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4304g00014 | 766 | PRINTS | Plant CLC chloride channel signature | 275 | 285 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium4304g00014 | 766 | PRINTS | Plant CLC chloride channel signature | 293 | 300 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium4304g00014 | 766 | PRINTS | Plant CLC chloride channel signature | 417 | 433 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium4304g00014 | 766 | PRINTS | Plant CLC chloride channel signature | 50 | 58 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium4304g00014 | 766 | PRINTS | Plant CLC chloride channel signature | 261 | 269 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium4304g00014 | 766 | SUPERFAMILY | Clc chloride channel | 54 | 568 | IPR014743 | - | |
Vium4304g00014 | 766 | SUPERFAMILY | CBS-domain pair | 569 | 745 | IPR046342 | - | |
Vium4304g00014 | 766 | FunFam | Chloride channel ClC3 | 68 | 385 | - | - | |
Vium4304g00014 | 766 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 21 | 751 | - | - | |
Vium4304g00014 | 766 | Gene3D | - | 567 | 746 | IPR046342 | - | |
Vium4304g00014 | 766 | Pfam | CBS domain | 696 | 745 | IPR000644 | - | |
Vium4304g00014 | 766 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 569 | 747 | - | - | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 240 | 259 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 465 | 485 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 176 | 195 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 497 | 513 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 515 | 534 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 553 | 567 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | PRINTS | Chloride channel signature | 145 | 162 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | ProSiteProfiles | CBS domain profile. | 695 | 755 | IPR000644 | - | |
Vium4304g00014 | 766 | Pfam | Voltage gated chloride channel | 133 | 547 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium4304g00014 | 766 | Gene3D | Clc chloride channel | 68 | 566 | - | - | |
Vium4304g00014 | 766 | SMART | cbs_1 | 586 | 639 | IPR000644 | - | |
Vium4304g00014 | 766 | SMART | cbs_1 | 698 | 749 | IPR000644 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4304g00014 | Vium-Chr4304 | 92907 | 97886 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4304g00014 | 8 | 765 | Ion Channels | AT5G33280 | 73.747 | 0.0 | 1112 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4304g00014 | K05016 | - | gmx:100817901 | 1290.4 |