Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4303g00010 ATGGATTTCTTCACGGTCTTCCTTCTCTGCCTTTCTGTTGTTTTCATCATCATCAAACTGTGTTCCAATGGAGCAACCAGCAAAAACTCACCCCCTTCACCTCCAAGGTTACCTCTACTGGGCAATCTCCACCAACTTGGTTTGTTCCCACACCGCACACTCCAAACTTTGGCTCAAAACTATGGATCTCTCATGCTACTCCACTTCGGGAAGGTACCAGTGCTTGTGGTCTCATCTGCTGATGCAGCACGTGAGGTGATGAAAACTCATGACCTGCTCTTCTCAGACAGACCACAACGTAAGATGAACGATGTCCTCTTGTACGGTTCCAAAGATCTGGCAAGTTCTACGTACGGGGAATACTGGCGGCAAATAAGGAGTCTGAGCGTTTTGCACCTTCTGAGTACCAAAAGGGTTCAGTCCTTTCGCCGTGTGAGGGAGGAGGAAACTGCCATAATGATGGAAAACATCAGGCAACGTTGTCGTGATTCGTTGGAGGTGAATTTAACTGACATGTGTGCTGCGGTTACGAATGATGTGGCGTGTAGAGTGGCTCTGGGAAGGAGGTACCGTGGAAGAGAAGGGGCGGGGTTTCAGAAGCTGTTGTTGGAGTTCGGGGAGTTGTTGGGTGCTGTGTGTATAGGGGACTATGTACCTTGGCTTCATTGGGTGAGCCATGGTTTGTTTCAGAGAGCCAATAGAATTGCCGAGCATTTGGACCAGTTTATAGACCAAGTGATCCAGGAGCATGTTACTAGGAATGGAAGAGATGGGGGTGCTGATGTTGATTCCCGGGACCATAATGATTTTGTGGATGTTTTGCTTTCGATGGAAGAGAATAACGCCAACACCACCGATTCCCTGATAAATAGAACTGCAATAAAGGCTTTGATACTGGATATGTTTGTTGCTGGTACCGACACCACTCACACATCCCTGGAGTGGACAATGTCAGAACTGTTAAAGCACTCAAGTGTGATGCAAACACTGCAAGAAGAGGTGAGAAGTGTTGTTGGTAACAGGAGTCGCGTAACTGAGGATGATTTGGGTGAAATGAAGTACTTGAAGGCTGTGATCAAAGAGAGCCTTCGGCTTCATCCACCACTTCCCTTAACAGTGCCTAGGAGATGCATGGAAGATGTCAAAGTGAAAGGGTATGAGATTGGAGCTGGCACTCAGGTGTTGGTGAATGCATGGGCCATTGCAAGAGATTCTTCGTGTTGGGACCAGCCTCTTGAGTTTAAACCAGAAAGGTTCCTAAGCAGTTCCATAGACTTGAAAGGACATGATTTTGAGCTTATTCCATTTGGAGCAGGAAGAAGGGGATGCCCTGGAATATCATTTGCCATAAAGATTGTTGAGATAGTAATGGCAAACCTTGTCCACCAATTTGATTGGTCATTGCCTGGTGGGGCGAGTGGGGAGGACTTGGACATGTCTGAAACACCTGGCCTTTCTGTTCATAGAAAATTTCCTCTTCTGGCTGTAGCAACTGCATATGAGAGAAATTAG 1512 0.4689 MDFFTVFLLCLSVVFIIIKLCSNGATSKNSPPSPPRLPLLGNLHQLGLFPHRTLQTLAQNYGSLMLLHFGKVPVLVVSSADAAREVMKTHDLLFSDRPQRKMNDVLLYGSKDLASSTYGEYWRQIRSLSVLHLLSTKRVQSFRRVREEETAIMMENIRQRCRDSLEVNLTDMCAAVTNDVACRVALGRRYRGREGAGFQKLLLEFGELLGAVCIGDYVPWLHWVSHGLFQRANRIAEHLDQFIDQVIQEHVTRNGRDGGADVDSRDHNDFVDVLLSMEENNANTTDSLINRTAIKALILDMFVAGTDTTHTSLEWTMSELLKHSSVMQTLQEEVRSVVGNRSRVTEDDLGEMKYLKAVIKESLRLHPPLPLTVPRRCMEDVKVKGYEIGAGTQVLVNAWAIARDSSCWDQPLEFKPERFLSSSIDLKGHDFELIPFGAGRRGCPGISFAIKIVEIVMANLVHQFDWSLPGGASGEDLDMSETPGLSVHRKFPLLAVATAYERN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4303g00010 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Vium4303g00010 503 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 SUPERFAMILY Cytochrome P450 31 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 Gene3D Cytochrome P450 17 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 Pfam Cytochrome P450 31 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4303g00010 503 PANTHER CYTOCHROME P450 71B11-RELATED 14 498 - -
Vium4303g00010 503 FunFam Cytochrome P450 83B1 18 496 - -
Vium4303g00010 503 CDD CYP71-like 61 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4303g00010 Vium-Chr4303 88853 90969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4303g00010 6 500 Cytochrome P450 AT3G48280 50.000 7.46e-177 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4303g00010 - - var:108336564 986.867