Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4303g00005 ATGTCAGATAAAATTGTAGTGTCTAGTGTGGTCTCTTCTTCATCTCCATATGCGGCCAGCCCTGCTCTTCTCTTGACCAGCGTCGCCGCGCCTCACTGTGGCTGGCCGAAAGCACCGTCGACGAGCTCAACTGTGCTAGAAGCGTCGCTGCTCTCCGCAACGTTCCTCCCTTTGCGCATTGCGACTACCAGACTGCGCCAACCTCCGCGACCAAGGCCTGCCACCAAACTGCCACACTACACCGTTGAGTGCTCATCGTCACGTTGCCGCCGGGAACTCTGGCCGTCATCGAAGGTGTCACCTGTGAGGGCCAAAACGCACGAACCACCTCCCTTACGACTCCTCCCGTGGTCGCACAAGGATTCCGCCGTTTATGCGCTTCACACTGCGTGCTTCACACTGCGCTTTCTATCCAGAAAATCCAAGAAAGACAAAAAGTCTAAACCAAAGAATGATGTGCACAACCAGGTGACCCCTCTTCCTGAGCTAATTGCCGAGCCAACAAATGCAAGATCAATGTCCTTTGTTGGAACACACGAGTACTTGGCCCAAGAGATCATCAAGGGTGAAGGGCATGGAAGTGTTGTGGACTGGTGGACATTTGGGATATTCCTATATGAGTTTCTGTTTGGTAGAACACCATTCAAAGGTCCTGCAAACCGTGCAACTTTGTTCAATGTAATTGGTGAGCCTATAAGATTTCCAGAATCTCCAATTGTTAGCTTTGCTGCCAGAGATTTGATCAGAGGTTTGCTTGTGAAGGAGCCCTAG 771 0.5123 MSDKIVVSSVVSSSSPYAASPALLLTSVAAPHCGWPKAPSTSSTVLEASLLSATFLPLRIATTRLRQPPRPRPATKLPHYTVECSSSRCRRELWPSSKVSPVRAKTHEPPPLRLLPWSHKDSAVYALHTACFTLRFLSRKSKKDKKSKPKNDVHNQVTPLPELIAEPTNARSMSFVGTHEYLAQEIIKGEGHGSVVDWWTFGIFLYEFLFGRTPFKGPANRATLFNVIGEPIRFPESPIVSFAARDLIRGLLVKEP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4303g00005 256 SUPERFAMILY Protein kinase-like (PK-like) 169 256 IPR011009 -
Vium4303g00005 256 Pfam Protein kinase domain 172 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4303g00005 256 Gene3D Transferase(Phosphotransferase) domain 1 169 256 - -
Vium4303g00005 256 PANTHER FLIPPASE KINASE 1-RELATED 124 256 - -
Vium4303g00005 256 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4303g00005 Vium-Chr4303 36616 39330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4303g00005 129 256 AGC Kinase Gene Family AT5G47750 79.688 1.85e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium4303g00005 Pkinase 9.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4303g00005 K08286 - vum:124836595 265.003