Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4303g00002 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGAAATCCTTCTCATACTCCTAATGAGATTGATGGCTTTCCGCTTGATAATGTTAAGAATTTTTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAAATGGAAGACAAGTAGCAGTGAAGACACTTTCTGCTGGGTCAAAGCAGGGAGTTCGTGAATTTTTATCTGAAATTAAAACTATATCAAATGTTAAACATCCAAACCTTGTTGAATTGGTTGGTTGCTGCGTTCAAGAAACTAATCGCATATTAGTGTATGAATATGTGGAAAATAACAGCCTTGATCGTGCATTAATTGGTGCAAGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGATATTTGCATGGGTACTGCTAGAGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTGCATAGAGACATCAAGGCAAGCAACATACTACTTGACAAACATTTCAAGCCAAAAATAGGAGATTTCGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGTGTTCTTATTCTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATTCCTCTTGGAATGGGCCTGGCAACTGTATGAAAATGGGAAACTATTGGAACTTGTGGATCCAGACATGGTTGAATTCCCTGAGGAAGAGGTAATTAGGTACATGAAGGTTGCTTTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAAGTTCTGAATATGCTGTCCAAGAACACGAGGCTGAATGAAAAGGAACTAACTGCACCAGGGTTTTTCCAGGATTCAGGAACATCTTCTAAGAAGAAGTCATCCTTTGAATCCACCAGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGTTGA 1104 0.4067 MSCGCFGASTLKKKRNPSHTPNEIDGFPLDNVKNFSDKDLRLATDNYHPSKKLGRGGFGTVYQGTLKNGRQVAVKTLSAGSKQGVREFLSEIKTISNVKHPNLVELVGCCVQETNRILVYEYVENNSLDRALIGARGSNIRLDWRKRSDICMGTARGLAFLHEELVPHIVHRDIKASNILLDKHFKPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTLKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYENGKLLELVDPDMVEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVLNMLSKNTRLNEKELTAPGFFQDSGTSSKKKSSFESTSYQFSSNPSSITQLAPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4303g00002 367 CDD STKc_IRAK 53 319 - -
Vium4303g00002 367 FunFam cold-responsive protein kinase 1 18 122 - -
Vium4303g00002 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 351 - -
Vium4303g00002 367 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Vium4303g00002 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Vium4303g00002 367 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Vium4303g00002 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4303g00002 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vium4303g00002 367 SUPERFAMILY Protein kinase-like (PK-like) 31 347 IPR011009 -
Vium4303g00002 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vium4303g00002 367 MobiDBLite consensus disorder prediction 333 367 - -
Vium4303g00002 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Vium4303g00002 367 MobiDBLite consensus disorder prediction 330 367 - -
Vium4303g00002 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4303g00002 Vium-Chr4303 19563 24730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4303g00002 10 357 Receptor kinase-like Gene Family AT1G56120 48.725 2.74e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4303g00002 PK_Tyr_Ser-Thr 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4303g00002 - - gmx:100775344 683.715