Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4302g00008 ATGGGCAAAGCTTCTAGTTCTTCCTCCTCTTCAATCACCAGCTGCAGGAACAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAACACAGCCAACACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCACTCAACATGTTGCCTCTTCCAGTTCAGGGGGGCATTGGCAACCGATGCAGCCACATCTAAGCAGTTATTCACAAGCTACTGAAGTTAATGATTGCAGCGATCATACGAGCTTCTTTGTGAAGGTTTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATTTGTTAGCTCATGATGGCTATCACGAGTTAGTGAAGACCCTTGAACAAATGTTTGACACCACCATTTTGTGGGGGACTGAGATGGATGGAGTTCAACAAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATCATGGTTGGGGACGTTCCATGGGAGATGTTCCTTTCGGCTGTAAAAAGGTTGAAGATCACAAGGGTTGAGACATTTGGGTGA 531 0.4557 MGKASSSSSSSITSCRNNPSNSTASSLTHQHSQHLRTDLRLGLSISATQHVASSSSGGHWQPMQPHLSSYSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQQERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4302g00008 176 SUPERFAMILY CAD & PB1 domains 80 170 - -
Vium4302g00008 176 MobiDBLite consensus disorder prediction 1 31 - -
Vium4302g00008 176 Gene3D - 78 175 - -
Vium4302g00008 176 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vium4302g00008 176 Pfam AUX/IAA family 72 171 IPR033389 -
Vium4302g00008 176 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Vium4302g00008 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 172 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4302g00008 Vium-Chr4302 75368 76649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4302g00008 88 169 B3 DNA Binding Superfamily AT4G23980 38.554 9.76e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium4302g00008 AUX_IAA 6.3e-29 CL0072