Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4302g00006 ATGATGTCTGGTCATCATTTAATGGACCCACAATCATGCCCCAAATTGGACGCTAAAGTTGTTGCATCAGTCTCCAATGATAAATCTAGTCAAGAGGCTCATCCTGATCGTGTAGAAGATGTTATTGAACAATCATCATCCAAGAGTCCCAAGTTTGAAGAATCCAAGCCCGGTGAGCCTCCTTTAAGAAGAACCAGAGTTTCCGTGCGTGCAAGATCAGAAGCTCCAGTGATTTGCGATGGATGTCAATGGAGGAAATATGGGCAAAAAGTATCCAAGGGTAATCCATGTCCTCGTGCCTACTATCGTTGCACCATGGCACTAGGATGTCCGGTTCGAAAACAGGTGCAAAGATGTACAGAGGACAAAAGTGTGTTGATAACAACTTACGAAGGCAATCATAACCACCCTCTTCCACCTTCAGCCACGGTGATGGCGAATTCTACCTCAGCAGCTGCAACTATGTTTTTATCTTCTTCAGGTTCAACAACAAGTAACGAAGCACTAAACAACAGTGTAGGAGTATTCTCTTCCATGTACCTCTCAGCCTCTGCACCATTTCCCACTATCACCCTTGACATGACCAACAACAACCCTATGCAACTGCACCGGGACACCTCCTCTTTTCCATTGCATGCAACTACTTTTCCTCAGCTACCAGGCCACCCTATCATCTTCCCTCACAAATTGCAACATTCATTAGGGCAAAAACAACCTTCGTTTATGACAGATATCATGACTGCAGCTGTTGCTTCCAATCCAAATTTCACTGTAGCGTTAGCAGCAGCTATCTCGTCAATTATTGGAGCTCCTAGAAGCAATGATGCAAATAATATCTACAGTAACAATGGTGGAAATGTTCTTGCTCTTGGGACATCTATGTTGCCTGGATCCACTTAA 900 0.4411 MMSGHHLMDPQSCPKLDAKVVASVSNDKSSQEAHPDRVEDVIEQSSSKSPKFEESKPGEPPLRRTRVSVRARSEAPVICDGCQWRKYGQKVSKGNPCPRAYYRCTMALGCPVRKQVQRCTEDKSVLITTYEGNHNHPLPPSATVMANSTSAAATMFLSSSGSTTSNEALNNSVGVFSSMYLSASAPFPTITLDMTNNNPMQLHRDTSSFPLHATTFPQLPGHPIIFPHKLQHSLGQKQPSFMTDIMTAAVASNPNFTVALAAAISSIIGAPRSNDANNIYSNNGGNVLALGTSMLPGST 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4302g00006 299 Pfam WRKY DNA -binding domain 80 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4302g00006 299 SMART WRKY_cls 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4302g00006 299 Gene3D WRKY domain 63 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4302g00006 299 ProSiteProfiles WRKY domain profile. 73 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4302g00006 299 MobiDBLite consensus disorder prediction 30 67 - -
Vium4302g00006 299 SUPERFAMILY WRKY DNA-binding domain 71 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4302g00006 299 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 277 IPR044810 GO:0003700
Vium4302g00006 299 MobiDBLite consensus disorder prediction 1 67 - -
Vium4302g00006 299 FunFam probable WRKY transcription factor 31 63 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4302g00006 Vium-Chr4302 47189 48351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4302g00006 45 268 WRKY Transcription Factor Family AT4G04450 51.807 1.59e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4302g00006 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4302g00006 - - vra:106754840 578.17