Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4301g00001 ATGAACCACTTGACCATTGAGACAGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAACAATGATGTTGAAGGTTTTAAACGAATGATTGAGAGGGATCCTTCCTGTGTAGACGAGGTAGGACTATGGTACAGTCGGCAGAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCATTGATGGTTGCTGCTACTTACGGGAGCATTGATATTTTGGATCTGATTCTCTCACTTTCTGGTTATGATATTAATAAACCTTGTGGTCTTGACAAAAGCACTGCTCTTCACTGTGCCGCTTCAGGCGGTGCTGAAAATGCTGTTGATGTTGTTATATTGCTTCTAGCAGCCGGGGCTGATCCAAACTCTGTTGATGGAAATGGTCATCGACCAGTTGATGTCATTGTTGTTCCTCCCAAGCATGAAACTGTTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCAGTGTGTAATCTCAGGGTGATCACAGCCCCATCAAATGCATATTCTCCACCATTGTCAACTTCACCAGAGAATGGCTCTCCTTCTGCACCAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTTGTTTCTTCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCTGACATAAAAAATAGCATATATTCAACAGATGAATTCCGGATGTATTCTTTCAAAGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACAGAATGCCCTTTTGTTCATCCTGGGGAGAATGCTCGGAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGTGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGTTGGCTGCATCCAGCACAGTATCGTACTCGTCTTTGCAAAGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGTTCAAGCACATCTTCTGCTATGGAATTTGCTGCAGCTATGAACATGTTACCTGGCTCTCCTTCCTCAATGTCTGTTATGTCTCCTTCACCGTTCACCCCACCCATGTCACCCTCTGCCAATGGCATGTCACACTCTTCCGTTGGCTGGCCCCAGCCAAATGTTCCCGCCTTGCATCTTCCAGGAAGCAATCTTCATTCCAGTCGATTGAGATCTTCATTCAATGCCAGAGATATTCCTATGGATGAGTTTGACATGTTGCCTGAGTACGATGCTCAGCAGCAGCAACAGCTCCTTAATGAGTTCTCTTGCCTCTCTAAACAGCCTAATGCCATGAACCGCTCCGGCCGCATTAAAACACTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCACCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCAACACATAAATCAGCTATTCTTAATCAATTTCAACAGCAGCAAAGCTTGCTGTCGCCTGTGAACACAAATTTTTCTTCTAAAAATGTTGAGAATCCTTTATTGCAGGCTGCCTCATTTGGGGTTCAAACATCAGGTAGGATGTCTCCTCGGAATGTGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGGAGTCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTACTGTTGCTGCAGCTGCTGCTGGGTCCCCAGTGAATTCTTGGTCAAAATGGGGACCCTCGAATGGTACATTGGATTGGGCTGTCAATGCTGATGAGTTAAGGAAACATCGTAGATCATCTTCGTTTGAGCATGGGAATAATAGTGAGGAGCCTGATTTCTCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAACTCAACTGCAACTGTCTCAAGTGGTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGACTCTGTTGATCATGCTGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCTTGTGGCTCAGCAAAATTAA 2106 0.4511 MNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSIDILDLILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHETVRNSLEALLQTDDSIAVCNLRVITAPSNAYSPPLSTSPENGSPSAPDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMEFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVGWPQPNVPALHLPGSNLHSSRLRSSFNARDIPMDEFDMLPEYDAQQQQQLLNEFSCLSKQPNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTNFSSKNVENPLLQAASFGVQTSGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSATVAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSTATVSSGAAAGSSSEVSNMSTQMDSVDHAVLGAWLEQMQLDLVAQQN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4301g00001 701 Gene3D - 272 333 - -
Vium4301g00001 701 PANTHER UNKEMPT FAMILY MEMBER 17 646 IPR045234 -
Vium4301g00001 701 Gene3D - 8 158 IPR036770 -
Vium4301g00001 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vium4301g00001 701 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Vium4301g00001 701 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Vium4301g00001 701 MobiDBLite consensus disorder prediction 173 192 - -
Vium4301g00001 701 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Vium4301g00001 701 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Vium4301g00001 701 SMART ANK_2a 10 39 IPR002110 GO:0005515
Vium4301g00001 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vium4301g00001 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vium4301g00001 701 Pfam Ankyrin repeats (3 copies) 49 126 IPR002110 GO:0005515
Vium4301g00001 701 MobiDBLite consensus disorder prediction 647 674 - -
Vium4301g00001 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vium4301g00001 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Vium4301g00001 701 SUPERFAMILY Ankyrin repeat 15 139 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4301g00001 Vium-Chr4301 24804 28845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4301g00001 7 695 C2H2 Transcription Factor Family AT5G12850 54.119 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4301g00001 Ank_2 1.5e-07 CL0465