Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4300g00023 ATGGCCTCATCCACCGGAACCTCTTCCACTTCACCCTCTCAGGACGATCTCCACCTTCTCATGGAACTGAGAAGAAAGAAGAGAAAGCAATCCAACCGTGACTCCGCCAGAAGATCAAGGATGCGAAAGCAGAAGCACTTCGATGATCTCACCGAACAGCTCCAGAGTCTCCAGAAGGAAAATGACCTTATCTCGAACCAACTCAACCTCACCACCCAACACTATCTCAAGCTCCACGCTCACAACTCCATTCTCGTAGCCCAGAAGACCGAGCTCGCTCAAACCCTTCACTCCTTCAATCACATCATCAAACTCATCAACGATACAAACCATTATTATCATCACCGTAACGATAACAAAACCAACAATAATTTCATCATTCCCATGCACGCGCCCTTCCTTAATCACCCCATTGTCGCCACTGCAGACAACATGTGTCTGTGGTGA 447 0.4787 MASSTGTSSTSPSQDDLHLLMELRRKKRKQSNRDSARRSRMRKQKHFDDLTEQLQSLQKENDLISNQLNLTTQHYLKLHAHNSILVAQKTELAQTLHSFNHIIKLINDTNHYYHHRNDNKTNNNFIIPMHAPFLNHPIVATADNMCLW 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4300g00023 148 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 27 42 IPR004827 GO:0003700|GO:0006355
Vium4300g00023 148 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 144 - -
Vium4300g00023 148 Coils Coil 40 67 - -
Vium4300g00023 148 SMART brlzneu 20 84 IPR004827 GO:0003700|GO:0006355
Vium4300g00023 148 Pfam bZIP transcription factor 22 80 IPR004827 GO:0003700|GO:0006355
Vium4300g00023 148 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 22 85 IPR004827 GO:0003700|GO:0006355
Vium4300g00023 148 CDD bZIP_plant_GBF1 25 75 IPR045314 GO:0003700|GO:0006355
Vium4300g00023 148 SUPERFAMILY Leucine zipper domain 23 79 IPR046347 GO:0003700|GO:0006355
Vium4300g00023 148 Gene3D - 23 77 - -
Vium4300g00023 148 FunFam BZIP transcription factor 22 73 - -
Vium4300g00023 148 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4300g00023 Vium-Chr4300 83655 84635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4300g00023 20 143 bZIP Transcription Factor Family AT4G34590 42.105 2.67e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4300g00023 bZIP_1 3.4e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4300g00023 K25786 - gmx:778146 173.326