Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4300g00014 ATGACCGATACTGAAGACGCCACACGACGCCGTAACGCGGTTACGGAGTACCGAAAGAAACTTCTTCAACACAAGGAATTGGAATCCAGAGTGCGATCGGTGAGAGAGAATTTGCGAGCTTCAAGAAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGCGTTGGACAGATCATTGGCGAGGTTCTCAGACCTCTCGACAATGAACGCCTGATAGTTAAGGCAAGCAGTGGACCTAGGTATGTAGTTGGTTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACCAGAGTGGTTCTTGATATGACAACACTAACCATAATGCGGGCTCTTCCACGTGAGGTTGATCCGGTAGTTTACAATATGCTGCATGAGGATCCCGGTAATATCAGTTATTCCGCAGTTGGTGGTTTATCTGATCAGATAAGAGAATTGAGGGAATCAATTGAACTACCTCTGATGAACCCTGAGCTCTTCCTTAGAGTCGGAATAAAACCTCCTAAGGGTGTTCTCCTTTACGGTCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCTAGTAATATAGATGCTAACTTCTTGAAGGTTGTTTCAAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATTAGAGAGATGTTTGGTTATGCACGAGATCATCAGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGCCGTCGTTTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTAATGGAGTTGCTTAATCAACTCGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGTCCCGACGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTGGATAGAAAAATAGAGATTCCATTGCCAAATGAACAATCTAGGATGGAAATTCTGAAGATTCATGCTGCTGGGATAGCTAAGCATGGTGAAATAGATTATGAAGCCGTTGTGAAGCTTGCTGAGGGCTTCAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGTGAGTTCTTTTACTCTGACGAAAGCTATTTTTCTGTCTATTTATCAGGCTCAAGGGTTAGCCCTCATCACTCTCTGGAACAATAACTTGACTAATTTCTTTGGTGCGCAGGCTGTTAGAAAACTGAATGATGCAAAGAAACTTGAATCCAGTGCTCCCTACAGTGCTGATTTTGGCAAAGACTAG 1308 0.432 MTDTEDATRRRNAVTEYRKKLLQHKELESRVRSVRENLRASRKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKVSSFTLTKAIFLSIYQAQGLALITLWNNNLTNFFGAQAVRKLNDAKKLESSAPYSADFGKD 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4300g00014 435 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Vium4300g00014 435 Coils Coil 24 58 - -
Vium4300g00014 435 SMART AAA_5 171 310 IPR003593 GO:0016887
Vium4300g00014 435 Pfam AAA+ lid domain 331 373 IPR041569 -
Vium4300g00014 435 FunFam 26S protease regulatory subunit 10B 128 308 - -
Vium4300g00014 435 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 382 - -
Vium4300g00014 435 Gene3D - 128 308 IPR027417 -
Vium4300g00014 435 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Vium4300g00014 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 389 IPR027417 -
Vium4300g00014 435 Gene3D - 309 377 - -
Vium4300g00014 435 Gene3D - 23 127 IPR012340 -
Vium4300g00014 435 FunFam 26S protease regulatory subunit 10B 23 127 - -
Vium4300g00014 435 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Vium4300g00014 435 FunFam 26S protease regulatory subunit 10B 309 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4300g00014 Vium-Chr4300 60629 63857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4300g00014 138 365 Calmodulin-binding Proteins AT3G56690 40.870 1.40e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4300g00014 K03064 - gmx:100802514 745.347