Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4300g00008 ATGTATTCAAACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCCCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGAATGGGGCCCCTACAGCTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGTTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTCCCATATCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAGGAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCGGTGAAGGCCAAGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAGCCCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACGGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGGCAGATATCTTCATGTCCCAACAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCATACACTGCACTGGCCTTGAGTACAATATCACGCCACTTTCGGTGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCACTTCCTCCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGAGCAGCAATATACTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGCTCAATCTCCTGACAGCAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTAGATGATAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGAATCCGAGGTAGTGATCATGGAGAAAATGGCTTGGATCCTAGAATTGGGAGACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTTCTGCTCCTGCCACATACGATTTATCTGAGTTAGGTAACATTGGTGTTGGTGGGCAGGTGTCACTAGCATTGGAATTGAGGAACTGTGATAGTGAAGGGTTTGGCGGGTCCAATGATGACATGCTTAGAAGACGTAAGAAACCATTGGCTTCTTCTTCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGAAAAGCAACAGAGCAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1905 0.4478 MYSNQAFSSGPYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVQSIDGNGAPTAGQDSFSNAGDSHSHLVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLKGTSSLKDDEASLQRELRNAECMASLASSGFHRREGLLYTPQHPSMCLGEGQDGSLGFSSSVLSPQYLKAAQELLDEIVNVRKALKQTGLEKQRSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMSSNILSSENTLKAPRDDAQSPDSKREESQDNIITVDDSDIQHHGLKLDHASELDRGIRGSDHGENGLDPRIGRLQGDQRFNINNSNSSYYGEGCIIASAPATYDLSELGNIGVGGQVSLALELRNCDSEGFGGSNDDMLRRRKKPLASSSEADLIDYHFTDQEKQQSKFGNPHLLHEFVV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4300g00008 634 MobiDBLite consensus disorder prediction 238 264 - -
Vium4300g00008 634 MobiDBLite consensus disorder prediction 505 527 - -
Vium4300g00008 634 MobiDBLite consensus disorder prediction 456 485 - -
Vium4300g00008 634 MobiDBLite consensus disorder prediction 50 74 - -
Vium4300g00008 634 MobiDBLite consensus disorder prediction 505 522 - -
Vium4300g00008 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 471 - -
Vium4300g00008 634 Pfam Associated with HOX 195 337 IPR006563 -
Vium4300g00008 634 CDD homeodomain 379 440 IPR001356 GO:0003677
Vium4300g00008 634 SMART prehox3 188 338 IPR006563 -
Vium4300g00008 634 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
Vium4300g00008 634 MobiDBLite consensus disorder prediction 469 485 - -
Vium4300g00008 634 Coils Coil 200 220 - -
Vium4300g00008 634 MobiDBLite consensus disorder prediction 228 264 - -
Vium4300g00008 634 Gene3D - 376 453 - -
Vium4300g00008 634 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
Vium4300g00008 634 SMART HOX_1 379 443 IPR001356 GO:0003677
Vium4300g00008 634 SUPERFAMILY Homeodomain-like 380 445 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4300g00008 Vium-Chr4300 33657 38285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4300g00008 93 451 Homeobox Transcription Factor Family AT1G19700 53.784 1.70e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium4300g00008 POX 8.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4300g00008 - - gmx:100775682 1039.25