Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4300g00001 ATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCCCTTCTACCTCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGCATTCAAATGGGGCCCCTACAGCTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGTTCAGTGATGCCTTCTATTGCATCAGTCCCCACCTTTCCATACCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGCCAAAGTGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCCTTGAAGCAAACAGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGATATCTTCATGTCCCAGTAATTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTACTGGACAAGAAGACAAAACTTTTATCCATGTTGGACGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCCGAACCTTACACCGCGCTAGCCTTGCGCACAATATCACGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTTATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTTCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGATTCCGAGATGAGCAGCAATCTACTGCCATCAGAGAACGCAGTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCGGAGTTGGACAGAGGGATTCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGATGGCCAAAGGTTCAACATCAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTACTGCCACATATGATTTGTCAGAGTTAGGTAACATTGGTGTAGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGTGTCCAACGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGGAAAGCAGCAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1914 0.4467 MYSNQAFSSGSYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVQSIDGHSNGAPTAGQDSFSNAGDSHSHLVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLKGTSSLKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPSNSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLPSENAVKAPRDDVQSSDSKREESQDNLITVDDSVIQHHGLKLDHASELDRGIQSSDHGENAMDPRIGKLQDGQRFNINNSNSSYYGEGCIIAPTTATYDLSELGNIGVGGQVSLALELRNCESEGFGVSNDDMHRRRKKTLASSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4300g00001 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 477 - -
Vium4300g00001 637 Pfam Associated with HOX 197 340 IPR006563 -
Vium4300g00001 637 MobiDBLite consensus disorder prediction 472 489 - -
Vium4300g00001 637 SMART prehox3 191 341 IPR006563 -
Vium4300g00001 637 MobiDBLite consensus disorder prediction 241 267 - -
Vium4300g00001 637 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Vium4300g00001 637 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Vium4300g00001 637 Coils Coil 203 223 - -
Vium4300g00001 637 CDD homeodomain 382 443 IPR001356 GO:0003677
Vium4300g00001 637 SMART HOX_1 382 446 IPR001356 GO:0003677
Vium4300g00001 637 Gene3D - 379 456 - -
Vium4300g00001 637 MobiDBLite consensus disorder prediction 49 74 - -
Vium4300g00001 637 MobiDBLite consensus disorder prediction 452 489 - -
Vium4300g00001 637 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Vium4300g00001 637 FunFam BEL1-like homeodomain protein 4 385 447 - -
Vium4300g00001 637 MobiDBLite consensus disorder prediction 231 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4300g00001 Vium-Chr4300 19691 24494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4300g00001 192 455 Homeobox Transcription Factor Family AT2G16400 63.370 9.03e-114 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium4300g00001 POX 2.6e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4300g00001 - - gmx:100775682 1089.72