Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4299g00005 ATGTCTTCCACAAAGAAAAGTCTTCTCAGAACCGTGTTCACAGCAAACGGAAGCTGTGGTTGCAGCAAATCAAAATCCTCCGAAGTTCATGAACCAACCCCAATACCCAAAACCTCCAACAACACTCACCAAAAACCAAACAACCTCAGCAGCATGGCCTCTTCCACCACTTCAATGGAACACGTAGATGAAGAAGAGTTCACCTCCACCACAGTATCCGAATCCGAGACTTTTCATGATCCCAACAACAACAACGTTGCACTCAAACGAAGCCCTCTTGTGGACAGTGTGGCCATCGAGAAGGACTCTTCCAACCCGTATCATGATTTCAGACACTCCATGCTCCAAATGATCTTTGAGAAAGAGATCGAGTCGGAGGACGATCTTCAAGATCTTCTGCAGTGCTTTCTTCACCTGAATGCACCGTGTCACCACCACGTCATCGTGAAAGCCTTCGACGCCATCTGCGAAGAAGCTTTTCCTCGCAAGGTTGGTACCACTCCGGCTGCGTCCGAACCTTCCCCCTCTCGCCGGAGCCCTCTTCGAAAGAGCAAGTGA 558 0.4946 MSSTKKSLLRTVFTANGSCGCSKSKSSEVHEPTPIPKTSNNTHQKPNNLSSMASSTTSMEHVDEEEFTSTTVSESETFHDPNNNNVALKRSPLVDSVAIEKDSSNPYHDFRHSMLQMIFEKEIESEDDLQDLLQCFLHLNAPCHHHVIVKAFDAICEEAFPRKVGTTPAASEPSPSRRSPLRKSK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4299g00005 185 MobiDBLite consensus disorder prediction 71 87 - -
Vium4299g00005 185 MobiDBLite consensus disorder prediction 164 185 - -
Vium4299g00005 185 ProSiteProfiles OVATE domain profile. 99 158 IPR006458 -
Vium4299g00005 185 MobiDBLite consensus disorder prediction 16 87 - -
Vium4299g00005 185 Pfam Transcriptional repressor, ovate 103 158 IPR006458 -
Vium4299g00005 185 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 28 159 IPR038933 GO:0045892
Vium4299g00005 185 NCBIfam uncharacterized plant-specific domain TIGR01568 97 156 IPR006458 -
Vium4299g00005 185 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vium4299g00005 185 MobiDBLite consensus disorder prediction 16 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4299g00005 Vium-Chr4299 24043 25636 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium4299g00005 Ovate 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4299g00005 - - gmx:102660065 257.684