Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4299g00003 ATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGTTTTCTAATTAATTGCAGGGAGATGCAAGAAAGACTGCGAGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAAGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA 1152 0.4201 MTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQISFLINCREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVPKLPSSPDVNKNQSTVVPEDKGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRDNTSTPSHPSNVGEVSSTSKPSGG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4299g00003 383 Pfam E2F transcription factor CC-MB domain 141 247 IPR032198 GO:0046983
Vium4299g00003 383 MobiDBLite consensus disorder prediction 356 383 - -
Vium4299g00003 383 SUPERFAMILY "Winged helix" DNA-binding domain 60 123 IPR036390 -
Vium4299g00003 383 SMART E2F_TDP_2 60 125 IPR003316 GO:0005667|GO:0006355
Vium4299g00003 383 Coils Coil 76 96 - -
Vium4299g00003 383 Gene3D - 54 127 IPR036388 -
Vium4299g00003 383 Gene3D - 132 248 - -
Vium4299g00003 383 SUPERFAMILY E2F-DP heterodimerization region 139 248 IPR037241 -
Vium4299g00003 383 CDD E2F_DD 136 248 IPR032198 GO:0046983
Vium4299g00003 383 FunFam E2F transcription factor 1 54 127 - -
Vium4299g00003 383 MobiDBLite consensus disorder prediction 264 300 - -
Vium4299g00003 383 Pfam E2F/DP family winged-helix DNA-binding domain 62 125 IPR003316 GO:0005667|GO:0006355
Vium4299g00003 383 PANTHER TRANSCRIPTION FACTOR E2F 6 348 IPR015633 GO:0000978|GO:0006357
Vium4299g00003 383 MobiDBLite consensus disorder prediction 1 55 - -
Vium4299g00003 383 Coils Coil 138 158 - -
Vium4299g00003 383 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4299g00003 Vium-Chr4299 2879 8450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4299g00003 13 382 E2F-DP Transcription Factor Family AT5G22220 61.404 5.16e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium4299g00003 E2F_CC-MB 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4299g00003 K06620 - gmx:100819817 665.611