LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4299g00001	ATGTCGGCACCGCGCGCTCCTTCCGCTGCCGCCACCGCCACCGCCACTGCCTCCTCCAACCCGCCCGATCAGATCATGCACACCATGAAACGCCAACTTCCCTTCTCTTCCATGAAACCACCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGAAGCCTCGACGCCGAAGCAGTCGTGGTCAAGACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGTTTTCTAATTAATTGCAGGGAGATGCAAGAAAGACTGCGAGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAAGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA	1413	0.4544	MSAPRAPSAAATATATASSNPPDQIMHTMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQISFLINCREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVPKLPSSPDVNKNQSTVVPEDKGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRDNTSTPSHPSNVGEVSSTSKPSGG	470

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium4299g00001	470	MobiDBLite	consensus disorder prediction	351	387	-	-
Vium4299g00001	470	SUPERFAMILY	"Winged helix" DNA-binding domain	147	210	IPR036390	-
Vium4299g00001	470	Gene3D	-	219	335	-	-
Vium4299g00001	470	SMART	E2F_TDP_2	147	212	IPR003316	GO:0005667\|GO:0006355
Vium4299g00001	470	PANTHER	TRANSCRIPTION FACTOR E2F	90	435	IPR015633	GO:0000978\|GO:0006357
Vium4299g00001	470	MobiDBLite	consensus disorder prediction	74	118	-	-
Vium4299g00001	470	MobiDBLite	consensus disorder prediction	1	27	-	-
Vium4299g00001	470	CDD	E2F_DD	223	335	IPR032198	GO:0046983
Vium4299g00001	470	Pfam	E2F/DP family winged-helix DNA-binding domain	149	212	IPR003316	GO:0005667\|GO:0006355
Vium4299g00001	470	Coils	Coil	163	183	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4299g00001	Vium-Chr4299	2600	8450	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4299g00001	30	469	E2F-DP Transcription Factor Family	AT5G22220	56.695	8.63e-156	449

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Vium4299g00001		E2F_CC-MB	2.9e-32	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4299g00001	K06620		-	gmx:100819817	784.252

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