Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4299g00001 ATGTCGGCACCGCGCGCTCCTTCCGCTGCCGCCACCGCCACCGCCACTGCCTCCTCCAACCCGCCCGATCAGATCATGCACACCATGAAACGCCAACTTCCCTTCTCTTCCATGAAACCACCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGAAGCCTCGACGCCGAAGCAGTCGTGGTCAAGACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGTTTTCTAATTAATTGCAGGGAGATGCAAGAAAGACTGCGAGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAAGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA 1413 0.4544 MSAPRAPSAAATATATASSNPPDQIMHTMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQISFLINCREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVPKLPSSPDVNKNQSTVVPEDKGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRDNTSTPSHPSNVGEVSSTSKPSGG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4299g00001 470 MobiDBLite consensus disorder prediction 351 387 - -
Vium4299g00001 470 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Vium4299g00001 470 Gene3D - 219 335 - -
Vium4299g00001 470 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Vium4299g00001 470 PANTHER TRANSCRIPTION FACTOR E2F 90 435 IPR015633 GO:0000978|GO:0006357
Vium4299g00001 470 MobiDBLite consensus disorder prediction 74 118 - -
Vium4299g00001 470 MobiDBLite consensus disorder prediction 1 27 - -
Vium4299g00001 470 CDD E2F_DD 223 335 IPR032198 GO:0046983
Vium4299g00001 470 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Vium4299g00001 470 Coils Coil 163 183 - -
Vium4299g00001 470 Pfam E2F transcription factor CC-MB domain 228 334 IPR032198 GO:0046983
Vium4299g00001 470 Coils Coil 252 272 - -
Vium4299g00001 470 SUPERFAMILY E2F-DP heterodimerization region 226 335 IPR037241 -
Vium4299g00001 470 MobiDBLite consensus disorder prediction 7 26 - -
Vium4299g00001 470 MobiDBLite consensus disorder prediction 90 118 - -
Vium4299g00001 470 FunFam E2F transcription factor 1 141 214 - -
Vium4299g00001 470 Coils Coil 225 245 - -
Vium4299g00001 470 MobiDBLite consensus disorder prediction 443 470 - -
Vium4299g00001 470 Gene3D - 141 214 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4299g00001 Vium-Chr4299 2600 8450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4299g00001 30 469 E2F-DP Transcription Factor Family AT5G22220 56.695 8.63e-156 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium4299g00001 E2F_CC-MB 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4299g00001 K06620 - gmx:100819817 784.252