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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vium4299g00001
ATGTCGGCACCGCGCGCTCCTTCCGCTGCCGCCACCGCCACCGCCACTGCCTCCTCCAACCCGCCCGATCAGATCATGCACACCATGAAACGCCAACTTCCCTTCTCTTCCATGAAACCACCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCACCGCCGAAGCCTCGACGCCGAAGCAGTCGTGGTCAAGACTCCTCAATTGAAGCGGAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCCACTGAACCAGCTAATAGTCCTTTTCGTACACCAGTATCAGGAAAGACAGGAAAAGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGCTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCGGCGGTTAGATGAACAAATAAGTTTTCTAATTAATTGCAGGGAGATGCAAGAAAGACTGCGAGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCCCATGGCACCACTTTGGAGGTACCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTACCGGAGGATAAAGGGAAAGGCGTTGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAAGATTTCGTCAGCGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGTAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGATAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA
1413
0.4544
MSAPRAPSAAATATATASSNPPDQIMHTMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDERRLDEQISFLINCREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVPKLPSSPDVNKNQSTVVPEDKGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPVVEWNELDPLQEDYCMTRDNTSTPSHPSNVGEVSSTSKPSGG
470
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vium4299g00001
470
MobiDBLite
consensus disorder prediction
351
387
-
-
Vium4299g00001
470
SUPERFAMILY
"Winged helix" DNA-binding domain
147
210
IPR036390
-
Vium4299g00001
470
Gene3D
-
219
335
-
-
Vium4299g00001
470
SMART
E2F_TDP_2
147
212
IPR003316
GO:0005667|GO:0006355
Vium4299g00001
470
PANTHER
TRANSCRIPTION FACTOR E2F
90
435
IPR015633
GO:0000978|GO:0006357
Vium4299g00001
470
MobiDBLite
consensus disorder prediction
74
118
-
-
Vium4299g00001
470
MobiDBLite
consensus disorder prediction
1
27
-
-
Vium4299g00001
470
CDD
E2F_DD
223
335
IPR032198
GO:0046983
Vium4299g00001
470
Pfam
E2F/DP family winged-helix DNA-binding domain
149
212
IPR003316
GO:0005667|GO:0006355
Vium4299g00001
470
Coils
Coil
163
183
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vium4299g00001
Vium-Chr4299
2600
8450
Dispersed/Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vium4299g00001
30
469
E2F-DP Transcription Factor Family
AT5G22220
56.695
8.63e-156
449
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
E2F-DP
Vium4299g00001
E2F_CC-MB
2.9e-32
No_clan
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vium4299g00001
K06620
-
gmx:100819817
784.252
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