Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4296g00001 ATGGCACAAAAACCAGTTTTCCTTTCTCTTTTACCCCTTCTAATCTTGTTTCTTGCCAACATCCAACTTTCAGAGCAGTTAGAGTTTTCTCAGTCTCAGACACTTCTCAAGGTTCAGCAACTTCTTGGTTATCCATCAGCATTAAGTGCCCTCAGCAGCACCTCAGACTTCTGCAATATTGAGCCTACCCCATATTTGACAATAGTCTGCTATGAGGATAGCTTGACACAGCTTCATGTTGTTGGCAACAATGATTTTACTACACTGCCTCCAAACTTCTCCTCTGATACTCTTTTTACTACAATAGGAACTCTGTCAAGCTTGAAAGTCCTCTCTCTTGTTTCTCTTGGACTCTGGGGGCCCTTGCCTGAAAGCATTGCACAGTTGTCTTCATTGGAAATACTTAACATTAGCTCAAACTACTTCAATGGAGTCATTCCATCTCAGCTTTCACTTCTCAGGAACCTGCAGTCAGTGGTGCTTGATGATAACAACATCAATGGTGAAATTCCTAACTGGGTAGGCTCACTTCAAGGTTTGGCTGTGCTTAGTATGAAGAAAAACTGGCTATGTGGGAGCCTTCCAACTTCATTGGATGGTCTTCAGACCTTGAGGGTGTTGGATCTGTCAAGTAATCAGTTATCTGGGGAAGTTCCTCATCTTAAGAATTTGGCTAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCACTACCCACCAAGTTAGTTTCTCTTGTGCTCAGAAATAACAGCTTCAGGCTAAGTGTCCCTTCTGGTTTAAATTCTTTGTATCTGCTCCAAAGGCTAGACCTTTCTTTGAATGGCTTTGTGGGGCCATTTCCACCATCATTATTGTCACTGCCTTCCATAAATTACCTTGATATTTCCTCAAATAAATTCACTGGAATGCTTTTCAGTAACACGTCATGCAATGATGATCTCCACTTTGTAAATTTGTCTTCAAATCTTCTGAAAGGGGAAATTCCCTCTTGTTTGGAACCAAAGACCAGGGTTGTTCTGTATGATGGCAACTGCTTATCAAATAAGAACCAAGATCAGCATCCTTTACATTTTTGCAGCAATGAGGCTTTGGCAGTGAAAATCATACCTCGTGAACCAAAACACAAGAGAACAACTGGTAAAACAGTTATTGTATCAAGTATGGGAAGTGTGGTAGGTGTAGTGTTGATTCTAGGAGTGGTTATCTTGGTTGTTAGCCGAGTTCACAAGAAACAGGTAGTGAAAATCCCTTCAAAGTCCCCTTCGGAAAATGTCACCAGCCAGTTACATAATGAAGATGAAGTGAAAACTACTACAAGGTCCATAATGGAGCATATCATCAAAAGGGTTCCTGACAAACGTGCTGTGGAAACACTGACAAGATCCATAAAGGAGCATGTAATGAGCCGAGTGAAAAATAAGCGTGTTGTTAGGGCATCAACAAGGTCCATAATAGAACATGTATCATCAGTTAACACAGCAAAACTACTCACAGATGCAAGGTATATATCAGAAACAATGAAGATGGGAGCCAGCCTTCCTCCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAATAATTTTGATTCATCATGTTTCATAAGTGAAGGCCCACATGGTCAGATTTATAAAGGGGTTCTCTCTGATGGGATGCACATTTCTATTAGAGGTTTGAAAATGAGGAAGAGACATAGCCCTCAAACTTACATGCACCATGTTGAGATGATTTCAAAACTAAGGCATTCACACTTGGTTAGTGCTCTTGGGCATGCTTTTGAGTGCAACCAGGATGATTCGTGTGTGAACAGTGTATTTCTCATATTTGAGTTTGTTCCAAACAGAAGTTTACGAAGCTGCGTTTCTGGATCTTCTGGGGAAAAGATTTCTTGGACTCAGAGAATAGCAGCTACAATTGGAGTGGTGAAGGGCATTCAATTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTCAAGATTACAGATATTGTTTTGGATAACAATCACAATGTTAAAATAAGCAGCTACAATCTGCCACTCTCTTCTGAAAATAAAAGAATGATAAGCAATGGAACTTACCCTGGACTCAAAGGAAATGTCCAAGCAAGGATAAAGGGTGAAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGCCGACCAATAATGTTTCACAATGAAGTTGGAACACTAAAAGATCTTTTACATGTAAGCATTAAAACTGATGACATAGCTAGAAGAAGTATTGTTGACCCAGCAGTTCACAAGGAATGCTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTGATGACCTAACTGAAAGGCCTTCTGTGGAAGATATTCTGTGGAACTTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAAAAGAGACTCAAGTGATCACAGTTACTCTCCTGCACCATCCTCCAGGGATTAA 2508 0.4015 MAQKPVFLSLLPLLILFLANIQLSEQLEFSQSQTLLKVQQLLGYPSALSALSSTSDFCNIEPTPYLTIVCYEDSLTQLHVVGNNDFTTLPPNFSSDTLFTTIGTLSSLKVLSLVSLGLWGPLPESIAQLSSLEILNISSNYFNGVIPSQLSLLRNLQSVVLDDNNINGEIPNWVGSLQGLAVLSMKKNWLCGSLPTSLDGLQTLRVLDLSSNQLSGEVPHLKNLANLQVLNLENNTFGPHFPSLPTKLVSLVLRNNSFRLSVPSGLNSLYLLQRLDLSLNGFVGPFPPSLLSLPSINYLDISSNKFTGMLFSNTSCNDDLHFVNLSSNLLKGEIPSCLEPKTRVVLYDGNCLSNKNQDQHPLHFCSNEALAVKIIPREPKHKRTTGKTVIVSSMGSVVGVVLILGVVILVVSRVHKKQVVKIPSKSPSENVTSQLHNEDEVKTTTRSIMEHIIKRVPDKRAVETLTRSIKEHVMSRVKNKRVVRASTRSIIEHVSSVNTAKLLTDARYISETMKMGASLPPYRTFALDELKEATNNFDSSCFISEGPHGQIYKGVLSDGMHISIRGLKMRKRHSPQTYMHHVEMISKLRHSHLVSALGHAFECNQDDSCVNSVFLIFEFVPNRSLRSCVSGSSGEKISWTQRIAATIGVVKGIQFLHTGIVPGLYSNNLKITDIVLDNNHNVKISSYNLPLSSENKRMISNGTYPGLKGNVQARIKGEDKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLHVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSDDLTERPSVEDILWNLQFAAQVQNSWKRDSSDHSYSPAPSSRD 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4296g00001 835 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Vium4296g00001 835 Gene3D Ribonuclease Inhibitor 152 242 IPR032675 -
Vium4296g00001 835 Gene3D Ribonuclease Inhibitor 243 371 IPR032675 -
Vium4296g00001 835 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 511 619 - -
Vium4296g00001 835 Gene3D Transferase(Phosphotransferase) domain 1 620 829 - -
Vium4296g00001 835 Pfam Protein kinase domain 543 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4296g00001 835 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 30 150 - -
Vium4296g00001 835 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4296g00001 835 Gene3D Phosphorylase Kinase; domain 1 497 619 - -
Vium4296g00001 835 FunFam probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 151 244 - -
Vium4296g00001 835 SUPERFAMILY L domain-like 83 347 - -
Vium4296g00001 835 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Vium4296g00001 835 SUPERFAMILY Protein kinase-like (PK-like) 515 810 IPR011009 -
Vium4296g00001 835 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 620 824 - -
Vium4296g00001 835 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 246 370 - -
Vium4296g00001 835 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 106 821 - -
Vium4296g00001 835 Gene3D Ribonuclease Inhibitor 30 151 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4296g00001 Vium-Chr4296 21665 26725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4296g00001 473 833 Miscellaneous Gene Families AT3G03770 57.221 7.08e-134 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium4296g00001 Pkinase 1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4296g00001 - - gmx:100797327 1371.3