Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4295g00004 ATGACCATCTTCACTTTCACCTTCTTAAAACTCTTCTTCCTCCTCCTACTACACTTCTCCACACACCTCCAAGCCTACACCTCAGAGGAAGTTTTCACCATCAATTGCGGCACCACCGGGAACTCCTCCGACGGTCAAAGAACGTGGACCGGCGACGCAGACACAAAGTACTTATCTTCCCAAGACGGCTCCGTTTCAGACAAGGCGACAACACAGTCTCCTTCCGTCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCCTTCGCCTCTTCTTCTACCCTGCAGACTACCCTTCCTTTCCCCGCACCCACGCATCCTTCTCCGTTCAATCCAACCTATTTACTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGAAGCTCAAGCCACCGACACTGTTTTCAGAGAATACGTCGTCAACGTCAACGACGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGCATCCAAACTCTTACGCTTTCATCAATGGAATCGAGGTACTTTCCATGCCAACCGATTTATATTACACACCAGCAAATGAGACAGGCTTCACGTTCATCGAACGTAGCACGCTGTACAGCGTTGGAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCCGGAGGACAAGAAATCTCGCCATATAACGACAGCGGTTTGTTCAGGGATTGGGCTGCCGAAGAACCTTACTTTATCAAACACAATCCAAAGAATGATGATCTATCAGCTGACGTTGATGGGAAAATAAACATAACCGTGAATCCCGATTACTTGGCACCAAAGGAACTGTTCAGAACATCGCGTAACATGGGCAGAAACGCCACTCTGAACAGAATGAGCAACCTCACTTGGGAGTTCCCAGTTGATTATGGCTTCACTTACGTTCTCAGACTCCACTTTTGCGAGCTTGATCCCGATATTACTGCTATCGGTGACAGGCGATTCACCATTTACATAGCGAGTCAGTTGGCTGATGAGCGTGCAGATGTAATGGTTTGGAGTCAGAAACAAAAAGGTCTAGCTGTGCATAAAAACTATGCCGTTTTTATTCCCAAGAATGGTGCTCAGAAAAAGTTTAATCTCTCGCTTCAAATGCACCCTTACGGAACCAGTGTAGATTCGAGATACCCAGATGCCTTCCTGAACGGTCTAGAGATCTTCAAAATCAGTGATTCGAACAACCTAGCTGGACCCAACCCGGACCCGGTTCAGACTCCACAGAACAACGTTCCCAGCCAAAACGGAAAGACCAGCGGCGGAAGCACAACTATCATTGCCGCTATAGCAGGGGTGGTGTCAGGCATCGTTTTGATCTCGCTAATCGTTTTCCTTGTCGTGTTTTTCAGACGTAAGAGAACCACAAAGCCAAAAGATTACAACAAGTCAAAGTCTTCTGCGACTTCCAAATGGGGTCCACTCTCCTTTACAACGACCAAGTCAACCACTACGAACTCCTCTCTACCGTCCGATCTCTGCCGCCACTTCTCCCTTGGGGAGATCGAAGCCGCCACCAACAACTTCGACGACGTTTTCATCGTCGGCGCCGGGGGATTTGGCCATGTGTATAAGGGCTACATCGACGGCGGTTCCACCCCAGTGGCCATCAAGCGACTCAAACCGGGTTCACAGCAGGGGGCGCACGAGTTCATGAACGAGATCGAGATGCTCTCGCAGCTCCGCCATCTTCATCTCGTGTCCCTAATCGGATACTGCAACGAGATGAACGAGATGATCCTCATCTACGACTTCATGGCACGTGGCACCCTACGCGACCATCTCTACAACACGGACAACCCCGCTATCCCGTGGAAGGAGCGCCTGAAGATCTGCATCGGCGCCGCGCGTGGGCTGCACTATCTGCACACTGGCGCGAAGCACACGATCATCCACCGCGACGTGAAGACCACAAACATCTTGTTGGATGATAAGTGGGTGGCCAAGGTCTCGGATTTCGGGCTTTCCCGAATTGGGCCCACAGGCATGTCAAAGGCCCATGTGAGCACCGTGGTGAAGGGCAGCATAGGGTATTTAGACCCAGAGTATTACAAACGACAGCAATTGACGGAAAAGTCTGACGTGTACTCTTTCGGCGTGGTGTTGTTTGAGTTACTCTGTGCTCGTCCGCCTCTGATCCGCACCGCGGAGAAGAAACAGGTGTCACTGGCTGATTGGGCGAGACACTGTTACCAAAATGGGACCATTGCGCAGATTGTTGACCCCGCATTGAAGGGGAGGATCGCACCAGAGTGCTTGAGGAAGTTCTGCGAGATTGGGGTGAGTTGTTTGTTGGACGATGGAACGCAGAGGCCGTCGATGAACGACGTCGTTTGGATGCTGGAGTTTGCGTTGCAGTTACAAGAGAGTGCGGAACAGCGAGATAATGATAACGTGATTGGCGGTGAGGGGGTTAATGAAAGAAGAGAGGAAGGTATGGAAGATTTGTTTAGTAGTGGAACGAGTGTGGGTCAGGTTTCGGATTTTAACAAGAGTAGTGGAAGTGTGGTGAGTGTGAGTACCAGCAGCGAAGAGCTTAGTAGCAGCTATAAAGAGAGTGATAGATTAGTGTCTGGGACTGTTTTCTCTGAAATTGTTGACCCAAAGCCACGTTGA 2667 0.5021 MTIFTFTFLKLFFLLLLHFSTHLQAYTSEEVFTINCGTTGNSSDGQRTWTGDADTKYLSSQDGSVSDKATTQSPSVNQVPFSTARLSRSQFNYSFPVSPGTKFLRLFFYPADYPSFPRTHASFSVQSNLFTLLNDFNASLNAEAQATDTVFREYVVNVNDGERLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPANETGFTFIERSTLYSVGTSFALQTEYRIKAGGQEISPYNDSGLFRDWAAEEPYFIKHNPKNDDLSADVDGKINITVNPDYLAPKELFRTSRNMGRNATLNRMSNLTWEFPVDYGFTYVLRLHFCELDPDITAIGDRRFTIYIASQLADERADVMVWSQKQKGLAVHKNYAVFIPKNGAQKKFNLSLQMHPYGTSVDSRYPDAFLNGLEIFKISDSNNLAGPNPDPVQTPQNNVPSQNGKTSGGSTTIIAAIAGVVSGIVLISLIVFLVVFFRRKRTTKPKDYNKSKSSATSKWGPLSFTTTKSTTTNSSLPSDLCRHFSLGEIEAATNNFDDVFIVGAGGFGHVYKGYIDGGSTPVAIKRLKPGSQQGAHEFMNEIEMLSQLRHLHLVSLIGYCNEMNEMILIYDFMARGTLRDHLYNTDNPAIPWKERLKICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTGMSKAHVSTVVKGSIGYLDPEYYKRQQLTEKSDVYSFGVVLFELLCARPPLIRTAEKKQVSLADWARHCYQNGTIAQIVDPALKGRIAPECLRKFCEIGVSCLLDDGTQRPSMNDVVWMLEFALQLQESAEQRDNDNVIGGEGVNERREEGMEDLFSSGTSVGQVSDFNKSSGSVVSVSTSSEELSSSYKESDRLVSGTVFSEIVDPKPR 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4295g00004 888 CDD STKc_IRAK 532 799 - -
Vium4295g00004 888 Pfam Malectin-like domain 34 408 IPR024788 -
Vium4295g00004 888 MobiDBLite consensus disorder prediction 834 853 - -
Vium4295g00004 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vium4295g00004 888 Pfam Protein tyrosine and serine/threonine kinase 532 796 IPR001245 GO:0004672|GO:0006468
Vium4295g00004 888 FunFam Receptor-like protein kinase FERONIA 498 602 - -
Vium4295g00004 888 PANTHER OS03G0124300 PROTEIN-RELATED 3 480 IPR046957 GO:0004672
Vium4295g00004 888 FunFam Receptor-like protein kinase FERONIA 603 817 - -
Vium4295g00004 888 ProSiteProfiles Protein kinase domain profile. 526 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4295g00004 888 MobiDBLite consensus disorder prediction 414 436 - -
Vium4295g00004 888 SUPERFAMILY Protein kinase-like (PK-like) 501 801 IPR011009 -
Vium4295g00004 888 FunFam FERONIA receptor-like kinase 216 409 - -
Vium4295g00004 888 MobiDBLite consensus disorder prediction 835 853 - -
Vium4295g00004 888 Gene3D Phosphorylase Kinase; domain 1 490 602 - -
Vium4295g00004 888 MobiDBLite consensus disorder prediction 475 502 - -
Vium4295g00004 888 CDD TM_EGFR-like 437 471 - -
Vium4295g00004 888 SMART serkin_6 526 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4295g00004 888 Gene3D - 26 188 - -
Vium4295g00004 888 Gene3D - 217 409 - -
Vium4295g00004 888 FunFam FERONIA receptor-like kinase 31 188 - -
Vium4295g00004 888 ProSitePatterns Protein kinases ATP-binding region signature. 532 555 IPR017441 GO:0005524
Vium4295g00004 888 MobiDBLite consensus disorder prediction 479 502 - -
Vium4295g00004 888 Gene3D Transferase(Phosphotransferase) domain 1 603 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4295g00004 Vium-Chr4295 17970 21356 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4295g00004 26 888 Receptor kinase-like Gene Family AT3G51550 50.447 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4295g00004 Malectin_like 1.4e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4295g00004 - - gsj:114381619 1347.8