Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4295g00001 ATGTCAGGTCTACAAAGCCCACCTCAAAGGCCATGGAGACGTGATATAGAATTCAGGGTCGAAGTCAAGATTCTGTGTCAACTACACCACCCAAATGTTGTTCCTTTGGTTGGTTTCTGTGATCACAAACATGACAAGTTTGTTGTGTATGATTATGTCTCCAATGGAAGCCTCCATGATTGTTTGCATGGCACCAACAATAACAGTGTTGTTCCCTTGTCATGGATACAAAGACTTAACATCTGCATCGGGGTGGCTCGTGGACTGCACTACATTTACTTCGAAACCAAGATACCTATCATACACCGTGCTGTGAAATCAAGCAACGTTCTTTTGGACCATAATTTGGTGCCTAAAGTGGCAGATTTTGGACTTTGCAAGAAGCACCCACAAGAGGAGTCAAGGCCAAAGCCACCAAGAGTTGAGTTGAGGGAGAACTTGGAGGTTAGTTTGGAATACATGGAGCCGGAGTATTTTATGACTGGAAGGTTATCAAACAAATCAGATGTGTACTCTTTTGGGGTGGTAATGTTAGAGATTTTGTGTAGGAAGAAAGCTTGTTTTTTAACCCCAGGTGGAGAATGTGAGTACCTTGCTAAGTGGGCCTTTGATGATGAAAGGAAGGGGGTTCTTGAGAAGATTGTTGACCCATCTCTCATTGGAAAAATAGCACCTGCTTGTTGGAAAGTGTTCATTGAGATTGTTCAGAGATGTTTGGCATCAGTTGAAGAGAGGCCAACGATGGGTGAAGTGGTAGTGATTCTTGAAAATGCATTTTTGTTGCAAGAGAGAGCAGATGTGTGA 804 0.4291 MSGLQSPPQRPWRRDIEFRVEVKILCQLHHPNVVPLVGFCDHKHDKFVVYDYVSNGSLHDCLHGTNNNSVVPLSWIQRLNICIGVARGLHYIYFETKIPIIHRAVKSSNVLLDHNLVPKVADFGLCKKHPQEESRPKPPRVELRENLEVSLEYMEPEYFMTGRLSNKSDVYSFGVVMLEILCRKKACFLTPGGECEYLAKWAFDDERKGVLEKIVDPSLIGKIAPACWKVFIEIVQRCLASVEERPTMGEVVVILENAFLLQERADV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4295g00001 267 Pfam Protein tyrosine and serine/threonine kinase 16 253 IPR001245 GO:0004672|GO:0006468
Vium4295g00001 267 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4295g00001 267 Gene3D Transferase(Phosphotransferase) domain 1 54 265 - -
Vium4295g00001 267 PANTHER OS07G0166700 PROTEIN 14 262 IPR045272 GO:0004714|GO:0006468
Vium4295g00001 267 Gene3D Phosphorylase Kinase; domain 1 7 53 - -
Vium4295g00001 267 PIRSF ILK 12 264 - -
Vium4295g00001 267 SUPERFAMILY Protein kinase-like (PK-like) 16 253 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4295g00001 Vium-Chr4295 1611 3122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4295g00001 17 263 Receptor kinase-like Gene Family AT5G61350 45.020 1.80e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4295g00001 PK_Tyr_Ser-Thr 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4295g00001 - - vum:124837524 555.058