Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4294g00003 ATGGAGCTGAAGCCAAATCTTACTCCAGTCCTTACTGATGCCGCACCCTTGACAAGGTCAAGGCTGGGTGTGTCTTCTGGTTTGTCACCTTACTCTTCTCCAAAAGGGGCAACCTTTCCCCATCATGGTCCCTTTCTGTCTATTCCAAGGAAGAAGACAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGGCTTGATGCCATGAAATGTTCTTCTCCTACTCGCAATAAAGTATCCAAAGATCTCAATCATGGAATTGGATCACATGATGCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTTGCATCTTTTGATCAAATTACTAACTGTGCAAAAGGGAAGAAAATAGCATTATTTCTTGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGTGCGTTTATGTCAGATAATATGCGTGCTGCTGTTAAAAAAGTCGCGGAATATTTTCCAACTGCAATAATCAGTGGAAGAAGGCGTGACAAGGTATATGAATTTGTTGGATTAAGTGACCTCTATTATGCTGGTAGTCATGGGATGGACATTATTGGTCCTCCCAGACAATCTATTTCTGATGATCACCCTGATTCTGATAAGAAGGGTCTTGGTGAACTTAATTTATTCCAACCTGCTGCTGAATTCCTTCCCATGATTGATGAGGTACTTAGGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCAACAGTTGAGAACAATAAATTTTGTGCATCTGTACATTACCGGAATGTAGATGAGGAGAATTGGCATATTGTGGGACAACGTGTATATGATGTTTTGAAGGGGTATCCTCGTTTGCGTTTAACTCATGGGCGGATGGTTTTAGAGGTTCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTCGGCAATCGCGATGACGTGCTAACAATATATGTTGGAGATGATAGAACAGATGAAGATGCCTTTAAGGTTTTGAGAGAAGCTAATAAAGGTTGTGGCATCTTAGTGTCCCCTTCCCCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCCTCAGAGGTCATGGAATTTCTGACATCACTTGCTGTATGGAAATCAAGCATTCAAGCTCGCTGA 1149 0.4204 MELKPNLTPVLTDAAPLTRSRLGVSSGLSPYSSPKGATFPHHGPFLSIPRKKTGILDDFRSSGWLDAMKCSSPTRNKVSKDLNHGIGSHDAAYSTWLLKFPSALASFDQITNCAKGKKIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRRRDKVYEFVGLSDLYYAGSHGMDIIGPPRQSISDDHPDSDKKGLGELNLFQPAAEFLPMIDEVLRLLKECTKDIEGATVENNKFCASVHYRNVDEENWHIVGQRVYDVLKGYPRLRLTHGRMVLEVRPVIDWDKGKAVTFLLESLGLGNRDDVLTIYVGDDRTDEDAFKVLREANKGCGILVSPSPKESNAVYSLRDPSEVMEFLTSLAVWKSSIQAR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4294g00003 382 NCBIfam trehalose-phosphatase 116 373 IPR003337 GO:0003824|GO:0005992
Vium4294g00003 382 Gene3D - 119 208 IPR023214 -
Vium4294g00003 382 Gene3D - 209 381 IPR023214 -
Vium4294g00003 382 Pfam Trehalose-phosphatase 122 363 IPR003337 GO:0003824|GO:0005992
Vium4294g00003 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 30 380 IPR044651 GO:0004805|GO:0005992
Vium4294g00003 382 NCBIfam HAD-IIB family hydrolase 121 337 IPR006379 -
Vium4294g00003 382 FunFam Trehalose 6-phosphate phosphatase 223 382 - -
Vium4294g00003 382 SUPERFAMILY HAD-like 120 374 IPR036412 -
Vium4294g00003 382 CDD HAD_TPP 120 367 - -
Vium4294g00003 382 FunFam Trehalose 6-phosphate phosphatase 119 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4294g00003 Vium-Chr4294 1988 6978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4294g00003 115 373 Trehalose Biosynthesis Gene Families AT1G70290 25.000 3.13e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4294g00003 K01087 - gmx:100783008 668.692