Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4293g00009 ATGTTCTTCCACGAAGAAGCCCAACCGGTTCTCGAAATCATGTTCACGCCGACCGAAATAGAGGAGCTATTCTCCCTCGTTAACGAACCGCTCAGCCCGGGGTCCGGTTCTCAGGAATCGAACCGGGTGGTCCGGTCCACGCACGAGAGAAAGCTCCGGCGAATGCAGTCGAACCGGGAGTCAGCCCAGCGGTCCCGGTGGAGAAAGAAGCGGCATTTAGAGAACCTCACGAACCAAGCGAACCGGCTCAGAATGGAAAACCGAGAACTAAAAAACCGGTTATGCTTAACCATGCACCAGAATCTTCTTCTCTCCTTGGAGAATGAACGTCTTAGATCCGAATCCGTGACCCTTATGGCTACACTCTCAAATCTTTATCAAATTTTAGCCACCATGATTTCACAACAGTAG 411 0.5109 MFFHEEAQPVLEIMFTPTEIEELFSLVNEPLSPGSGSQESNRVVRSTHERKLRRMQSNRESAQRSRWRKKRHLENLTNQANRLRMENRELKNRLCLTMHQNLLLSLENERLRSESVTLMATLSNLYQILATMISQQ 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4293g00009 136 Coils Coil 73 93 - -
Vium4293g00009 136 PANTHER BZIP TRANSCRIPTION FACTOR 44 35 132 - -
Vium4293g00009 136 MobiDBLite consensus disorder prediction 31 68 - -
Vium4293g00009 136 Gene3D - 48 129 - -
Vium4293g00009 136 Coils Coil 45 65 - -
Vium4293g00009 136 MobiDBLite consensus disorder prediction 43 63 - -
Vium4293g00009 136 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 48 94 IPR004827 GO:0003700|GO:0006355
Vium4293g00009 136 FunFam BZIP transcription factor 48 99 - -
Vium4293g00009 136 SMART brlzneu 46 110 IPR004827 GO:0003700|GO:0006355
Vium4293g00009 136 CDD bZIP_plant_GBF1 51 100 IPR045314 GO:0003700|GO:0006355
Vium4293g00009 136 SUPERFAMILY Leucine zipper domain 50 102 IPR046347 GO:0003700|GO:0006355
Vium4293g00009 136 Pfam bZIP transcription factor 50 94 IPR004827 GO:0003700|GO:0006355
Vium4293g00009 136 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 53 68 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4293g00009 Vium-Chr4293 125286 125696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4293g00009 9 129 bZIP Transcription Factor Family AT3G49760 38.168 9.13e-20 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4293g00009 bZIP_1 3.7e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4293g00009 - - var:108337908 253.062