Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4293g00004 ATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGACAGCAGTTGCGCCTTTGGTTCTTCTCTTGCTTCAGATCCTGAGACAAAACACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGCAAGTGAAGATGAGTGGAGGACTTCAAAAGTGCCTAAAACTGATGACAACATGTCTGCTGCATCCAAAGCAATGCTCTTTCATCAGAGAAACTCTCTGCTGAGATCTAATGTCACCCTTTTCTCTGAGGGCCACAACCAACCACAAATGCTGAGTTTCTCTTCACCAAAATCAGAGCCTTTGATGGTGGACAAGGCCTCCTTAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGTTACAGCAGAAATACAGGTTACAGTTCGGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACGCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCAACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAAGCGGCCTCCTGAGACCCAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTACTCCTCCTAATGCTTCCTCAAACTCCATTGTGGTGCCCGGCGGCAACAACAACAACACCTTTGCACACAACAATGTGCACCACCCTCTTCCATCTCATTCCTCTCCAGCCAACACCATCAATAGGATGTTTATGAGTAGCAAAGAGAACAGTAACAACGCTAGTGAGAGGATGCAGGATGGCCCTGCGCTTCCCATGGTGCCTCCAACTCTTGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACACCAACTCCCATATGATGAATCTTCCTCAAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCTCTCAGGCACTTCATCGATGACTCTCCAAAACCACAGTCTCACCATCACCATCACCGTTCTTCTGTTTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAGTTGTCGATCTCCATACCGATATCTTCCTCAGATTTCATGTCATTCACTACCTCCTCACCCTCTAATGAGAAACTCACACTGTCACCACTAAGGCTTTCAAGGGAGATAGACCCTATTCAAATGGGGTTGGGAGTGGGAAGTGGTGCTCCCAATGAGTCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAAAGTTCTATGGGTGGCCCTCTTGGTGAGGTTTTGAACCTGAGTAGTACTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCTCTCAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCACTAGGGTCGTCTCCAAATGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCAAGGGCAGAGAACAACAACATCAAAGAAGGTGCCAGTGCCACCACACTGTGCAATGCCTTGTGA 1821 0.4805 MDLGVVGLEGLVGSDSSCAFGSSLASDPETKHKWYGSGVLKQERSGTASEDEWRTSKVPKTDDNMSAASKAMLFHQRNSLLRSNVTLFSEGHNQPQMLSFSSPKSEPLMVDKASLNATLPFSYHQLSSYSRNTGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSAAFCNFSSGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTTTPPNASSNSIVVPGGNNNNTFAHNNVHHPLPSHSSPANTINRMFMSSKENSNNASERMQDGPALPMVPPTLELKPKDPFMIHKHQLPYDESSSRNNNEFGLVTSDSLLNPSQKRSFGSSSSQKDDSESQQQHSLRHFIDDSPKPQSHHHHHRSSVWPELDNMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLRLSREIDPIQMGLGVGSGAPNESNTRQANWIPITWESSMGGPLGEVLNLSSTNNNSNGSDHCGKNTSALNLMKDGWDNSPPLGSSPNGVLQKTAFGSLSNSSAGSSPRAENNNIKEGASATTLCNAL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4293g00004 606 SMART QLQ_2 151 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium4293g00004 606 MobiDBLite consensus disorder prediction 266 339 - -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 250 355 - -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 45 59 - -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 559 595 - -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 525 545 - -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 367 439 - -
Vium4293g00004 606 Pfam WRC 222 264 IPR014977 -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 525 595 - -
Vium4293g00004 606 Pfam QLQ 152 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium4293g00004 606 MobiDBLite consensus disorder prediction 43 62 - -
Vium4293g00004 606 ProSiteProfiles QLQ domain profile. 152 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium4293g00004 606 PANTHER GROWTH-REGULATING FACTOR 5 90 460 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium4293g00004 606 MobiDBLite consensus disorder prediction 371 408 - -
Vium4293g00004 606 ProSiteProfiles WRC domain profile. 221 265 IPR014977 -
Vium4293g00004 606 MobiDBLite consensus disorder prediction 409 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4293g00004 Vium-Chr4293 81706 86281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4293g00004 41 596 GRF Transcription Factor Family AT2G22840 42.708 9.79e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium4293g00004 WRC 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4293g00004 - - gmx:100818860 957.977