Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4293g00002 ATGAAGTCGATGAATGATGGCAACGCTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCCCATCATCACCATCATCACTTCTATCATCACCCTCAGGTTTCTGCAGCTGCAGCACCTTGCAACACTGTTCCTACAGGCTTTTATATTTCCCCTTCACACCTTAACCCCTCAGGAATCTGCTATGGCGTTGGAGAAAACGGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGCTCACTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCCAGTGATGGTGCCAACCACATCCCCAAAACTGGAGGACTTCCTTGGTGGTGCAAGTATGGGAGCTCAAGAGTATGGAGGGCATGAAAGAGAAGCAATGGCTCTGAGCCTTGACAGCGTCTACTATAGCAGCCAGAATGCGGAACCTGAAGCCAACAGAGGCCATCCTTCTTCTCTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCACCCATATTACTCTGGGCTTGGGATTTACCATGTGGAGGAGGAAGCCAAGCAACCACACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGTGTTGCTTGCTTCAAAAACTGGGTGCCACCAAGGGGATATTCTTCCACTCAACAGAATCCGGAGCAGCAGCAAGTGAATAATAGCAGTGGCATGGGGGAGGGTCACGGTACTTCTGGGAATGCTGGTGTTGGTTGTGGGGAGTTGCAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAGTCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCCAGAACTGAATCAGTAGCTGGGGATGCCAAAAAGAGAGGCTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGAGTGACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACTCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAGTATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTACAGAGGAGTGACAAGGCACCACCAACACGGTAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAAGAAGCAGCTGAGGCATATGACGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTTACCAACTTCGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCTAGAAGAAACAAGGAAAGTGAGCCAAGAACTGAGGCCGTAGAGTACAACGGTGTGTCAAGCCAACAAGAAGCTGAGACTGTGAACAACAATGAGAACAATGAGAAGGGATCATCGGATTGGAAGATGGGTTTGTATCATCAGCAACAGCAACAGTCAAACAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTAGAGGAGTCTACTAAGATAGGTGCTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACCATGCTCTTTCCTAAGCCTCCGGTGGGGTCAAAGGTTGTCACCAGCCCTATTGCTAATGGTGTGAGTGTTAGCTCGTGGTTTCCCTCTCAAATGAGGCCAGTCTCTATGTCACACTTGCCAGTTTTTGCTGCTTGGAGTGATACCTAG 2046 0.48 MKSMNDGNADDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHFYHHPQVSAAAAPCNTVPTGFYISPSHLNPSGICYGVGENGAFHPPLAMMPLKSDGSLCIMEALTRSQTPVMVPTTSPKLEDFLGGASMGAQEYGGHEREAMALSLDSVYYSSQNAEPEANRGHPSSLGLLSDPFRQQTHPYYSGLGIYHVEEEAKQPHVTVCSSQMPQVVEEGVACFKNWVPPRGYSSTQQNPEQQQVNNSSGMGEGHGTSGNAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSRTESVAGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAVEYNGVSSQQEAETVNNNENNEKGSSDWKMGLYHQQQQQSNNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMLEESTKIGAHFSNPSSLVTSLSSSREGSPDKTGPTMLFPKPPVGSKVVTSPIANGVSVSSWFPSQMRPVSMSHLPVFAAWSDT 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4293g00002 681 SMART rav1_2 429 493 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 SMART rav1_2 327 399 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 MobiDBLite consensus disorder prediction 525 547 - -
Vium4293g00002 681 MobiDBLite consensus disorder prediction 229 252 - -
Vium4293g00002 681 CDD AP2 326 393 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 CDD AP2 428 489 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 MobiDBLite consensus disorder prediction 273 294 - -
Vium4293g00002 681 SUPERFAMILY DNA-binding domain 326 395 IPR016177 GO:0003677
Vium4293g00002 681 MobiDBLite consensus disorder prediction 229 260 - -
Vium4293g00002 681 FunFam AP2-like ethylene-responsive transcription factor 428 489 - -
Vium4293g00002 681 MobiDBLite consensus disorder prediction 616 640 - -
Vium4293g00002 681 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 560 - -
Vium4293g00002 681 Pfam AP2 domain 327 385 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 Pfam AP2 domain 430 479 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 Gene3D AP2/ERF domain 326 395 IPR036955 GO:0003700|GO:0006355
Vium4293g00002 681 Gene3D AP2/ERF domain 429 489 IPR036955 GO:0003700|GO:0006355
Vium4293g00002 681 PRINTS Ethylene responsive element binding protein signature 328 339 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 PRINTS Ethylene responsive element binding protein signature 469 489 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 ProSiteProfiles AP2/ERF domain profile. 429 487 IPR001471 GO:0003700|GO:0006355
Vium4293g00002 681 SUPERFAMILY DNA-binding domain 428 489 IPR016177 GO:0003677
Vium4293g00002 681 MobiDBLite consensus disorder prediction 273 315 - -
Vium4293g00002 681 FunFam AP2-like ethylene-responsive transcription factor ANT 326 395 - -
Vium4293g00002 681 ProSiteProfiles AP2/ERF domain profile. 327 393 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4293g00002 Vium-Chr4293 7640 12264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4293g00002 410 681 AP2-EREBP Transcription Factor Family AT4G37750 27.303 3.10e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium4293g00002 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4293g00002 K09285 - gmx:100798179 1097.03