Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4293g00001 ATGAAGTCGATGAATGATGGCAACGCTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCCCATCATCACCATCATCACTTCTATCATCACCCTCAGGTTTCTGCAGCTGCAGCACCTTGCAACACTGTTCCTACAGGCTTTTATATTTCCCCTTCACACCTTAACCCCTCAGGAATCTGCTATGGCGTTGGAGAAAACGGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGCTCACTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCCAGTGATGGTGCCAACCACATCCCCAAAACTGGAGGACTTCCTTGGTGGTGCAAGTATGGGAGCTCAAGAGTATGGAGGGCATGAAAGAGAAGCAATGGCTCTGAGCCTTGACAGCGTCTACTATAGCAGCCAGAATGCGGAACCTGAAGCCAACAGAGGCCATCCTTCTTCTCTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCACCCATATTACTCTGGGCTTGGGATTTACCATGTGGAGGAGGAAGCCAAGCAACCACACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGTGTTGCTTGCTTCAAAAACTGGGTGCCACCAAGGGGATATTCTTCCACTCAACAGAATCCGGAGCAGCAGCAAGTGAATAATAGCAGTGGCATGGGGGAGGGTCACGGTACTTCTGGGAATGCTGGTGTTGGTTGTGGGGAGTTGCAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAGTCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCCAGAACTGAATCAGTAGCTGGGGATGCCAAAAAGAGAGGCTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGAGTGACAAGGCACCACCAACACGGTAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAAGAAGCAGCTGAGGCATATGACGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTTACCAACTTCGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCTAGAAGAAACAAGGAAAGTGAGCCAAGAACTGAGGCCGTAGAGTACAACGGTGTGTCAAGCCAACAAGAAGCTGAGACTGTGAACAACAATGAGAACAATGAGAAGGGATCATCGGATTGGAAGATGGGTTTGTATCATCAGCAACAGCAACAGTCAAACAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTAGAGGAGTCTACTAAGATAGGTGCTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACCATGCTCTTTCCTAAGCCTCCGGTGGGGTCAAAGGTTGTCACCAGCCCTATTGCTAATGGTGTGAGTGTTAGCTCGTGGTTTCCCTCTCAAATGAGGCCAGTCTCTATGTCACACTTGCCAGTTTTTGCTGCTTGGAGTGATACCTAG 1740 0.4879 MKSMNDGNADDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHFYHHPQVSAAAAPCNTVPTGFYISPSHLNPSGICYGVGENGAFHPPLAMMPLKSDGSLCIMEALTRSQTPVMVPTTSPKLEDFLGGASMGAQEYGGHEREAMALSLDSVYYSSQNAEPEANRGHPSSLGLLSDPFRQQTHPYYSGLGIYHVEEEAKQPHVTVCSSQMPQVVEEGVACFKNWVPPRGYSSTQQNPEQQQVNNSSGMGEGHGTSGNAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSRTESVAGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAVEYNGVSSQQEAETVNNNENNEKGSSDWKMGLYHQQQQQSNNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMLEESTKIGAHFSNPSSLVTSLSSSREGSPDKTGPTMLFPKPPVGSKVVTSPIANGVSVSSWFPSQMRPVSMSHLPVFAAWSDT 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4293g00001 579 MobiDBLite consensus disorder prediction 229 252 - -
Vium4293g00001 579 Pfam AP2 domain 327 377 IPR001471 GO:0003700|GO:0006355
Vium4293g00001 579 ProSiteProfiles AP2/ERF domain profile. 327 385 IPR001471 GO:0003700|GO:0006355
Vium4293g00001 579 MobiDBLite consensus disorder prediction 273 294 - -
Vium4293g00001 579 MobiDBLite consensus disorder prediction 229 260 - -
Vium4293g00001 579 Gene3D AP2/ERF domain 326 387 IPR036955 GO:0003700|GO:0006355
Vium4293g00001 579 SUPERFAMILY DNA-binding domain 326 387 IPR016177 GO:0003677
Vium4293g00001 579 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 314 458 - -
Vium4293g00001 579 CDD AP2 326 387 IPR001471 GO:0003700|GO:0006355
Vium4293g00001 579 FunFam AP2-like ethylene-responsive transcription factor 326 387 - -
Vium4293g00001 579 MobiDBLite consensus disorder prediction 273 315 - -
Vium4293g00001 579 SMART rav1_2 327 391 IPR001471 GO:0003700|GO:0006355
Vium4293g00001 579 MobiDBLite consensus disorder prediction 423 445 - -
Vium4293g00001 579 MobiDBLite consensus disorder prediction 514 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4293g00001 Vium-Chr4293 7640 12267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4293g00001 235 579 AP2-EREBP Transcription Factor Family AT4G37750 32.099 8.14e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium4293g00001 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4293g00001 K09285 - gmx:100798179 535.028