Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4291g00002 ATGCAGTTCCCTCCACATCTATCCGAAACCAAATTCCCTCCTTCCCTCGTTTTCTGCTCTCGCCTCCTCTACGCTCCTAACTCCCTCTTTTCCTTCCAAACCCTTTTCCCCACTCTTTCTCTCTCCAAGCCTCACTTTCTCTCTCTAAAACCCTACTTTCCGCCCATCCTCCCCCTTTTCCCTCCAAATTCCCCACAATTTCGCTCCGCCCCTCGCCCCATGTCCACCACCGCCGGACCTCCCGACCGCCGTGCCTCGCCGCCTCGGGGGGCTGCCGGCACCACTATCCGCCCCGCGCTCAAGCGCCACCTAGCTTTCGTCACTAAACCGCCCTTTGCTCCCCCTGACGACTACCACAGCTTCTCCTCCATCGACTCCCGCCGCCTTGCCGATGAAGCCGTTGTCGTTAGATCTCCTTACATGAAGCGAAAGGGTGGAATGAATGACAGCGAAGGAGAGTCTCACACACAGAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGTAACATAACGAATAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGAGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCCACACCCATCTCAAATGCTGGTTCCCCGTCTCCTCTTACTCCTGCCAGCAGCTGCCGTTATGACAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGATCTAAATAAAGCAGCCGAGACTTTGGAGGTGCAAAAGAGGAGGATTTATGACATAACGAATGTTTTAGAAGGCATTGGTCTCATTGAAAAGAAACTCAAAAATAGAATACATTGGAAGGGAATTGAATCTTCCACGTCTGGTGAGGTGGATGGCGATATATCTGTGCTTAAGGAAGAAGTTGAGAAACTTTCATTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGATTGAGAAAGCTGAGTGAAAATGAAAATAACCGGAAGTGCCTTTTCGTGACCGAGGATGACATTAAGAGCCTACCTTGCTTCCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTCATCAGGTACTTTTCTTGGCTAGTTTTATTTACTGAACTTTTTTGTTTTTTTGTTCTTATGCTGTGCATCCAGAAATCACATTAG 1281 0.4738 MQFPPHLSETKFPPSLVFCSRLLYAPNSLFSFQTLFPTLSLSKPHFLSLKPYFPPILPLFPPNSPQFRSAPRPMSTTAGPPDRRASPPRGAAGTTIRPALKRHLAFVTKPPFAPPDDYHSFSSIDSRRLADEAVVVRSPYMKRKGGMNDSEGESHTQKWSNSPGYTNVSNITNSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQERLRKLSENENNRKCLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLIRYFSWLVLFTELFCFFVLMLCIQKSH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4291g00002 426 Coils Coil 298 335 - -
Vium4291g00002 426 MobiDBLite consensus disorder prediction 142 215 - -
Vium4291g00002 426 FunFam E2F transcription factor 1 214 287 - -
Vium4291g00002 426 Pfam E2F transcription factor CC-MB domain 301 401 IPR032198 GO:0046983
Vium4291g00002 426 CDD E2F_DD 298 400 IPR032198 GO:0046983
Vium4291g00002 426 SMART E2F_TDP_2 220 285 IPR003316 GO:0005667|GO:0006355
Vium4291g00002 426 SUPERFAMILY E2F-DP heterodimerization region 298 400 IPR037241 -
Vium4291g00002 426 SUPERFAMILY "Winged helix" DNA-binding domain 220 283 IPR036390 -
Vium4291g00002 426 Pfam E2F/DP family winged-helix DNA-binding domain 222 285 IPR003316 GO:0005667|GO:0006355
Vium4291g00002 426 MobiDBLite consensus disorder prediction 64 95 - -
Vium4291g00002 426 Gene3D - 214 287 IPR036388 -
Vium4291g00002 426 PANTHER TRANSCRIPTION FACTOR E2F 154 401 IPR015633 GO:0000978|GO:0006357
Vium4291g00002 426 MobiDBLite consensus disorder prediction 199 215 - -
Vium4291g00002 426 Gene3D - 292 401 - -
Vium4291g00002 426 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4291g00002 Vium-Chr4291 47428 51162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4291g00002 94 403 E2F-DP Transcription Factor Family AT2G36010 61.890 6.56e-124 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium4291g00002 E2F_CC-MB 7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4291g00002 K06620 - gmx:100811762 595.89