Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium428g00003 ATGATGCCCCATCAGCAAGAAAACGCTGTTACACCTGACAATCCAGCAATCCCCAACCGCCCGGAGAACAGCTCCGTCCACGCCGAACCACCGTCGTCCGCCGCCAATCACATTCGCAACACCAATAATTCTCACCAACACCCACAACCAAATATTTCACCGCCCAGATTTTCTGTTCTTCGTCAATCCCTTCCCCCAGTTACCCTCAAATTTGAGGATGTTACTTACAGCATAACTTTTGAAAGGGACAAGAATGGTTGCGTATCTTCTCCAAAACAAAAACACAAAAGGACAGTGTTGAATGGTGTCACTGGTATGGTGGGGCCAGGGGAGGTGATGGCAATGTTGGGTCCATCAGGTAGTGGCAAGACCACTTTACTCACTGCCCTCGCCGGCCGGCTCACCGGAAAACTATCCGGTGCCGTAACGTATAACAACCACCCTTTCTCAAGCTCCATGAGGCGCAACATAGGTTTTGTGTCCCAAGAAGATGTGTTGTATCCTCACCTCACCGTGATTGAGACTCTAACTTATGCTGCCATGTTGAAGCTTCCGAGAAGTTTGACAAGGGAAGAGAAAATGGACCAAGCTGAGATGATCATCCAGGAGCTAGGGTTGTCCCGGTGCCGAAACAACCTCGTTGGTGGTGGCGCAGCCGTTTTCCGGGGGATTTCCGGCGGGGAGCGAAAGCGGGTCAACATAGGACAAGAGATGTTGGTAAACCCGAGTTTGTTGTTGCTCGATGAGCCAACATCCGGGTTGGACTCCACCACCGCCCAACGCATCGTGGCAATGCTTCATAGTCTTGCTCGAAGCGGTCGAACGGTGGTGACCACCATTCACCAACCTTCGAGCAGGTTGTTTTGGATGTTTGACAAGGTGTTGTTGTTGTCGGACGGGTACCCGCTTTTCACCGGGCAAGCATGTCGGGCCATGAATTATTTTGAGTCCATCGGGTTTGTGCCCACTTTCAATTTCATCAACCCGGCTGATTTTCTGCTTGACCTTGCTAATGGTATAGTTGTTGATGTCAAAGAAGATGAACATTTAGATCATCATGAGGATCAAGCTTCAATCAAACAATTTCTAGTTTCATCGTATANTGATGTGAACGAGTTGTTTCACCACACACGGGGCAGGTCCCCCAAGATGTTCGACATCAATACATGTATTCAGATGGTCAAGTCCAGAGGGGTGAACTGTATGACTTAG 1212 0.4934 MMPHQQENAVTPDNPAIPNRPENSSVHAEPPSSAANHIRNTNNSHQHPQPNISPPRFSVLRQSLPPVTLKFEDVTYSITFERDKNGCVSSPKQKHKRTVLNGVTGMVGPGEVMAMLGPSGSGKTTLLTALAGRLTGKLSGAVTYNNHPFSSSMRRNIGFVSQEDVLYPHLTVIETLTYAAMLKLPRSLTREEKMDQAEMIIQELGLSRCRNNLVGGGAAVFRGISGGERKRVNIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLHSLARSGRTVVTTIHQPSSRLFWMFDKVLLLSDGYPLFTGQACRAMNYFESIGFVPTFNFINPADFLLDLANGIVVDVKEDEHLDHHEDQASIKQFLVSSYXDVNELFHHTRGRSPKMFDINTCIQMVKSRGVNCMT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium428g00003 403 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 39 369 - -
Vium428g00003 403 FunFam ABC transporter G family member 22 87 318 - -
Vium428g00003 403 MobiDBLite consensus disorder prediction 1 58 - -
Vium428g00003 403 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Vium428g00003 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 319 IPR027417 -
Vium428g00003 403 Gene3D - 82 318 IPR027417 -
Vium428g00003 403 MobiDBLite consensus disorder prediction 1 59 - -
Vium428g00003 403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 324 IPR003439 GO:0005524
Vium428g00003 403 CDD ABCG_EPDR 66 306 - -
Vium428g00003 403 SMART AAA_5 109 302 IPR003593 GO:0016887
Vium428g00003 403 Pfam ABC-2 type transporter 281 349 IPR043926 GO:0140359
Vium428g00003 403 Pfam ABC transporter 100 252 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium428g00003 Vium-Chr428 12281 14843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium428g00003 99 285 Calmodulin-binding Proteins AT2G36910 29.949 1.32e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium428g00003 K05681 - vum:124839671 791.186