Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium428g00002 ATGATGCCCCATCAGCAAGAAAACGCTGTTACACCTGACAATCCAGCAATCCCCAACCGCCCGGAGAACAGCTCCGTCCACGCCGAACCACCGTCGTCCGCCGCCAATCACATTCGCAACACCAATAATTCTCACCAACACCCACAACCAAATATTTCACCGCCCAGATTTTCTGTTCTTCGTCAATCCCTTCCCCCAGTTACCCTCAAATTTGAGGATGTTACTTACAGCATAACTTTTGAAAGGGACAAGAATGGTTGCGTATCTTCTCCAAAACAAAAACACAAAAGGACAGTGTTGAATGGTGTCACTGGTATGGTGGGGCCAGGGGAGGTGATGGCAATGTTGGGTCCATCAGGTAGTGGCAAGACCACTTTACTCACTGCCCTCGCCGGCCGGCTCACCGGAAAACTATCCGGTGCCGTAACGTATAACAACCACCCTTTCTCAAGCTCCATGAGGCGCAACATAGGTTTTGTGTCCCAAGAAGATGTGTTGTATCCTCACCTCACCGTGATTGAGACTCTAACTTATGCTGCCATGTTGAAGCTTCCGAGAAGTTTGACAAGGGAAGAGAAAATGGACCAAGCTGAGATGATCATCCAGGAGCTAGGGTTGTCCCGGTGCCGAAACAACCTCGTTGGTGGTGGCGCAGCCGTTTTCCGGGGGATTTCCGGCGGGGAGCGAAAGCGGGTCAACATAGGACAAGAGATGTTGGTAAACCCGAGTTTGTTGTTGCTCGATGAGCCAACATCCGGGTTGGACTCCACCACCGCCCAACGCATCGTGGCAATGCTTCATAGTCTTGCTCGAAGCGGTCGAACGGTGGTGACCACCATTCACCAACCTTCGAGCAGGTTGTTTTGGATGTTTGACAAGGTGTTGTTGTTGTCGGACGGGTACCCGCTTTTCACCGGGCAAGCATGTCGGGCCATGAATTATTTTGAGTCCATCGGGTTTGTGCCCACTTTCAATTTCATCAACCCGGCTGATTTTCTGCTTGACCTTGCTAATGGTATAGTTGTTGATGTGAAAGAAGATGAACATTTAGATCATCATGAGGATCAAGCTTCAATCAAACAATTTCTAGTTTCATCGTATAAGAAGAATGCATATCCTCTTCTAAAACAAGAGATTCAACAAAATCAGAGAGAACTAGTATGTTTTGCTTCAAGAACATTAAGTCCTGAGAACCAATGGACCACTGGCTGGTGGGAACAATCCATGGTTCTGCTCAAGAGAGGTTTGAAAGAGAGGAGACATGAATCTTACTCTCGCCTTAGAATTTTTCAAGTCTTGTCTGTCTCAATTCTCTCAGGACTTCTATGGTGGAATTCTAATCCCTCAGATATACAAGATCAGGTAGGTTTGCTATTCTTCTATTCCATTTTCTGGGGTTTCTTCCCTCTCTTCAATGCCATCTTTGCTTTTCCACTTGATCGACCAATGTTGATAAAAGAAAGATCATCTGGAATGTACCATTTATCCTCCTATTATGTTGCTAGAACAGTCGGGGACTTACCAATGGAGCTTGTGCTTCCTACTATCTTTGTGACAATATCTTATTGGATGGGAGGTTTAAAGCCTTCCTTAGTTACATTTGTGTTTACTCTCTTGATCATGCTTTTCAATGTGATAGTATCTCAAGGAATAGGCCTTGCACTTGGGGCCATTCTAATGGATGCCAAACAAGCCACAACCTTAGCCTCAGTGACTATGTTAGTGTTTCTCTTAGCTGGGGGTTACTACATTCAACAAATTCCATTCTTTATATCTTGGTTGAAGTACATCTCTTTTAGTCACTACTGCTATAAGCTTCTTGCAGGAGTACAATACTCAGTAAACGAGGTTTATGAGTGTGAACCAGGGTTACATTGTAAGATTAGAGATTTTCCGGCCATAAAGTGTTTAGGACTTGGTAATTTGTCGAAAGATGTGCTTGTTTTGACTATAATGTTGATTGAATATAGAGTTGTGGCATATCTAGCTTTGAAGAAGGTGCTTCATCGTTGA 2013 0.4471 MMPHQQENAVTPDNPAIPNRPENSSVHAEPPSSAANHIRNTNNSHQHPQPNISPPRFSVLRQSLPPVTLKFEDVTYSITFERDKNGCVSSPKQKHKRTVLNGVTGMVGPGEVMAMLGPSGSGKTTLLTALAGRLTGKLSGAVTYNNHPFSSSMRRNIGFVSQEDVLYPHLTVIETLTYAAMLKLPRSLTREEKMDQAEMIIQELGLSRCRNNLVGGGAAVFRGISGGERKRVNIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLHSLARSGRTVVTTIHQPSSRLFWMFDKVLLLSDGYPLFTGQACRAMNYFESIGFVPTFNFINPADFLLDLANGIVVDVKEDEHLDHHEDQASIKQFLVSSYKKNAYPLLKQEIQQNQRELVCFASRTLSPENQWTTGWWEQSMVLLKRGLKERRHESYSRLRIFQVLSVSILSGLLWWNSNPSDIQDQVGLLFFYSIFWGFFPLFNAIFAFPLDRPMLIKERSSGMYHLSSYYVARTVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVFTLLIMLFNVIVSQGIGLALGAILMDAKQATTLASVTMLVFLLAGGYYIQQIPFFISWLKYISFSHYCYKLLAGVQYSVNEVYECEPGLHCKIRDFPAIKCLGLGNLSKDVLVLTIMLIEYRVVAYLALKKVLHR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium428g00002 670 MobiDBLite consensus disorder prediction 1 58 - -
Vium428g00002 670 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Vium428g00002 670 Gene3D - 83 318 IPR027417 -
Vium428g00002 670 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 39 661 - -
Vium428g00002 670 Pfam ABC-2 type transporter 407 611 IPR013525 GO:0016020|GO:0140359
Vium428g00002 670 FunFam ABC transporter G family member 22 87 318 - -
Vium428g00002 670 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 324 IPR003439 GO:0005524
Vium428g00002 670 Pfam ABC-2 type transporter 281 345 IPR043926 GO:0140359
Vium428g00002 670 CDD ABCG_EPDR 66 306 - -
Vium428g00002 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 318 IPR027417 -
Vium428g00002 670 SMART AAA_5 109 302 IPR003593 GO:0016887
Vium428g00002 670 Pfam ABC transporter 100 252 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium428g00002 Vium-Chr428 7928 11664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium428g00002 99 285 Calmodulin-binding Proteins AT2G36910 29.949 2.81e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium428g00002 K05681 - gmx:100810165 1075.46