Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4289g00001 ATGGCAAGAGAGATCATGATGCTGCAGAAGCTTGATCATCCCAATGTCATCAAGCTTAAAGGACTAGCTACATCGAGAATGCAGTATAGTCTTTATCTGGTTTTTGACTTCATGCAGTCTGATCTCACTCGAATTATCTCCCGACCCGGGGAGACACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTACTTTGTGGTCTCCAGCACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGAAAAGGGGTTCTGAAAATTGCGGATTTTGGGCTTGCAACTTCCATTGAATATGGAAAACCTCTAACAAATAGAGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCAGATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTATTTCAAAAAACTGAAGCTAACAACAAGCTTCCGGCCTCCACAGCATTACAAACCTACCTACCAAGAGAACTTCAACAAGTTTCCTTCCTCTTCCCACTCCCTCTTGGCCAGACTTCTTGATCTCAACCCCACAAATCGTGCAACTGCTGCCTCTGCCCTTCAAACTGAATTCTTCCGATGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAGTCATCAAAGACGAGGATGAACGCTTACAAACTAAGAGAAGCAAAAGGCACAGAGTTTCTAAAAGAGGCCAACCATCTCAAACAAGTAAAAGTGAAGCTGAATCACGAAAAACCCAAAGTCCAGAACAACCTCGTCAAGACACACAATCAACAAAACAGAAGAATGTGGAACAGCAGAAACAGAGTCAAGAAACTGGGCATAGTGCTAGCAGCACATCATCCGGGTCAAGACTATTCACGAATGAAGGGAGCACAAATACATCTTTATCACCAACTTTTCTCTCTAGTGGCAGTGTGAGAAAATCTCCCAAAACAGAGGGTAGCCCAAATGCTCTTAAGAACATAAATCACTATAATGCACTCTTACAGGCTTCTATGATTGATATCATCAACCGAAATGAAGGCACCGAAGTTCCTCAGCTTCCAAAATCCTTCTCTCACTTGGATTATCGACTTGGTCCAGACAAGCTATCAAACCTCTATACTTCATCTAATAAATATATTTAA 1260 0.427 MAREIMMLQKLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLCGLQHCHERGIMHRDIKASNLLIDRKGVLKIADFGLATSIEYGKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIQMIFKLCGSPSEDYFKKLKLTTSFRPPQHYKPTYQENFNKFPSSSHSLLARLLDLNPTNRATAASALQTEFFRCSPLACDPSALPVVIKDEDERLQTKRSKRHRVSKRGQPSQTSKSEAESRKTQSPEQPRQDTQSTKQKNVEQQKQSQETGHSASSTSSGSRLFTNEGSTNTSLSPTFLSSGSVRKSPKTEGSPNALKNINHYNALLQASMIDIINRNEGTEVPQLPKSFSHLDYRLGPDKLSNLYTSSNKYI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4289g00001 419 MobiDBLite consensus disorder prediction 259 362 - -
Vium4289g00001 419 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4289g00001 419 MobiDBLite consensus disorder prediction 293 362 - -
Vium4289g00001 419 SMART serkin_6 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4289g00001 419 FunFam Putative serine/threonine-protein kinase 40 275 - -
Vium4289g00001 419 Gene3D Transferase(Phosphotransferase) domain 1 45 275 - -
Vium4289g00001 419 PANTHER CELL DIVISION PROTEIN KINASE 2 242 - -
Vium4289g00001 419 SUPERFAMILY Protein kinase-like (PK-like) 2 240 IPR011009 -
Vium4289g00001 419 Pfam Protein kinase domain 2 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4289g00001 419 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
Vium4289g00001 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4289g00001 Vium-Chr4289 9596 13532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4289g00001 3 370 Core Cell Cycle Gene Families AT5G10270 39.535 1.38e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium4289g00001 Pkinase 1.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4289g00001 K08819 - gmx:100782603 653.284