Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4289g00001 | ATGGCAAGAGAGATCATGATGCTGCAGAAGCTTGATCATCCCAATGTCATCAAGCTTAAAGGACTAGCTACATCGAGAATGCAGTATAGTCTTTATCTGGTTTTTGACTTCATGCAGTCTGATCTCACTCGAATTATCTCCCGACCCGGGGAGACACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTACTTTGTGGTCTCCAGCACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCTAACTTGTTAATAGACAGAAAAGGGGTTCTGAAAATTGCGGATTTTGGGCTTGCAACTTCCATTGAATATGGAAAACCTCTAACAAATAGAGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCAGATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTATTTCAAAAAACTGAAGCTAACAACAAGCTTCCGGCCTCCACAGCATTACAAACCTACCTACCAAGAGAACTTCAACAAGTTTCCTTCCTCTTCCCACTCCCTCTTGGCCAGACTTCTTGATCTCAACCCCACAAATCGTGCAACTGCTGCCTCTGCCCTTCAAACTGAATTCTTCCGATGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAGTCATCAAAGACGAGGATGAACGCTTACAAACTAAGAGAAGCAAAAGGCACAGAGTTTCTAAAAGAGGCCAACCATCTCAAACAAGTAAAAGTGAAGCTGAATCACGAAAAACCCAAAGTCCAGAACAACCTCGTCAAGACACACAATCAACAAAACAGAAGAATGTGGAACAGCAGAAACAGAGTCAAGAAACTGGGCATAGTGCTAGCAGCACATCATCCGGGTCAAGACTATTCACGAATGAAGGGAGCACAAATACATCTTTATCACCAACTTTTCTCTCTAGTGGCAGTGTGAGAAAATCTCCCAAAACAGAGGGTAGCCCAAATGCTCTTAAGAACATAAATCACTATAATGCACTCTTACAGGCTTCTATGATTGATATCATCAACCGAAATGAAGGCACCGAAGTTCCTCAGCTTCCAAAATCCTTCTCTCACTTGGATTATCGACTTGGTCCAGACAAGCTATCAAACCTCTATACTTCATCTAATAAATATATTTAA | 1260 | 0.427 | MAREIMMLQKLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLCGLQHCHERGIMHRDIKASNLLIDRKGVLKIADFGLATSIEYGKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIQMIFKLCGSPSEDYFKKLKLTTSFRPPQHYKPTYQENFNKFPSSSHSLLARLLDLNPTNRATAASALQTEFFRCSPLACDPSALPVVIKDEDERLQTKRSKRHRVSKRGQPSQTSKSEAESRKTQSPEQPRQDTQSTKQKNVEQQKQSQETGHSASSTSSGSRLFTNEGSTNTSLSPTFLSSGSVRKSPKTEGSPNALKNINHYNALLQASMIDIINRNEGTEVPQLPKSFSHLDYRLGPDKLSNLYTSSNKYI | 419 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4289g00001 | 419 | MobiDBLite | consensus disorder prediction | 259 | 362 | - | - | |
Vium4289g00001 | 419 | ProSiteProfiles | Protein kinase domain profile. | 1 | 237 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4289g00001 | 419 | MobiDBLite | consensus disorder prediction | 293 | 362 | - | - | |
Vium4289g00001 | 419 | SMART | serkin_6 | 1 | 237 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4289g00001 | 419 | FunFam | Putative serine/threonine-protein kinase | 40 | 275 | - | - | |
Vium4289g00001 | 419 | Gene3D | Transferase(Phosphotransferase) domain 1 | 45 | 275 | - | - | |
Vium4289g00001 | 419 | PANTHER | CELL DIVISION PROTEIN KINASE | 2 | 242 | - | - | |
Vium4289g00001 | 419 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 240 | IPR011009 | - | |
Vium4289g00001 | 419 | Pfam | Protein kinase domain | 2 | 237 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4289g00001 | 419 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 44 | - | - | |
Vium4289g00001 | 419 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 77 | 89 | IPR008271 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4289g00001 | Vium-Chr4289 | 9596 | 13532 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4289g00001 | 3 | 370 | Core Cell Cycle Gene Families | AT5G10270 | 39.535 | 1.38e-83 | 263 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CRK7-CDK9 | Vium4289g00001 | Pkinase | 1.6e-58 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4289g00001 | K08819 | - | gmx:100782603 | 653.284 |