Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00044 ATGTCGCCGCCGGGGTTCCCTGCTGCTGGACCCTCCGATTTCTACGGCGGAGCAACCGGATTCCCTACTCAATCCATGGCAGTTACACCCACCATCGACAACCACTCCGCCACAACTCACCACCCTCTCTACCGATCCCAACCTTCAATTATGCTTCATCCCTCCTCCAACATACCCAAACACCAAACATCCTCTCTCATCGGGAAACGCACCCTCGCAGAATTCCAGACCCACAACCTCACTAACACCATCAGCAACAACCTTCTTGTTAGCAACAACAATAACCAACTCCTTACCAACTATCAATTTCGTTCCGTAAAGCCCAGAACTTTTCAACACAACCAATTCCCCACGTTCTCTCCTGAATTAGCTGCCTTACCGTCACACCGTTACGGCGCCTCTCTTCTCCATCACATTCGCCCTAACGCTCTTAACCCACAACCTGTCACGAGTTCGATCCTGTCTCACACAAATTTCTCTCCAGTTCAAAACAGGCTAACCGCGACCCTTGAATCAGAGAAGAACTTCATAGACCACCGACTCCAGGAGTTGGAAAAAGAACTTCTAGAAGACAATGATGATGACCAAAGCGACGCCGTTTCAGTCGTTACCACCTCTGAATGGTCACACACAATACAGAACTTAATCACTCCGCCCAAACGTGCCTCGTCATCACCATCTTCCTCTACCACTACCACGTCGTCCAACTCCTCCGTAGAATCCATCAATGTCATACAGTCCCTGACGGAGGTCGCGAAAGCGATTTCAGAAGAGAGATTCGAGGTCGCCACGCAGATCCTTACCCGATTCTCGCAGAATTCGGATCGACCCTTCGTAAATTGCATGGTTTCCGCGCTCAAGTCGCGAATGAGTCACGCTGAGTATCCACCACCTGTTGAGGAATTGTTCGGCAGGGAACACGCCGAGTCCACTCAGTTGCTATTTGAACACTCGCTCTTCTTTAGGGTCGCGCTCATGGTAGCCAACATCGCAATCCTCGAATCTGCATTCGACGATAAAACACAGAACCCCAAACTATGCGTGGTGGATTTCGACATCGGGAACGGGAAACAATACGCCAGCCTTCTCCACGAGCTCTCTTTGCGGCGAAAGGGCTATCCGGCCGTCGTCAAGATCATCGCCGTTACGGAGAACAGCGCTGACGAGAGGATGAGTTCTGCGGGCGTGATGCTCGGAAGACTCGCAGAGCAACTCGGGATTGGTTTCGAATTCAAAGTGCTGACTCAGAGAATCGCCGAGTTAACTCGCGAGTCTTTGGGTTGCGAAGCGGATGAGGCGCTGGCGGTGAACTTCGCATTCAGACTTTACAAAATGCCCGACGAGAGTGTCTCCACGGAGAACCCGCGCGACGAACTTTTGCGGCGCGTGAAGGCACTCGCGCCGCGAGTGGTGACGCTGGTGGAGCAGGAATCAAACACCAATACAGCGCCCTTCGTGGCTCGCGTGGCCGAGTCGTGCGCGTATTACGGCGCGCTGTTTGACTCGCTTGAGACTACGATGACACGGGAAAACTCGTGGCGAATAAAAATGGAGGAGGGACTGAGGCGGAAGATAGCGAACACAGTGGCATGCGAAGGAAGGGAGCGCGTGGAAAGGTGCGAAGTGTTTGGAAAGTGGCGCGCGCGCATGGACATGGCTGGTTTCAGGTTGAAACCACTGAGTCAGAGAGTCGCTGAGTCAATCAAAGAACGACTCGGTGGTGAGAACCGGGTGACAGTAAAAGTAGAAAAGGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTGACCGTGGCTTCTGCTTGGTGTTAA 1812 0.5276 MSPPGFPAAGPSDFYGGATGFPTQSMAVTPTIDNHSATTHHPLYRSQPSIMLHPSSNIPKHQTSSLIGKRTLAEFQTHNLTNTISNNLLVSNNNNQLLTNYQFRSVKPRTFQHNQFPTFSPELAALPSHRYGASLLHHIRPNALNPQPVTSSILSHTNFSPVQNRLTATLESEKNFIDHRLQELEKELLEDNDDDQSDAVSVVTTSEWSHTIQNLITPPKRASSSPSSSTTTTSSNSSVESINVIQSLTEVAKAISEERFEVATQILTRFSQNSDRPFVNCMVSALKSRMSHAEYPPPVEELFGREHAESTQLLFEHSLFFRVALMVANIAILESAFDDKTQNPKLCVVDFDIGNGKQYASLLHELSLRRKGYPAVVKIIAVTENSADERMSSAGVMLGRLAEQLGIGFEFKVLTQRIAELTRESLGCEADEALAVNFAFRLYKMPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSWRIKMEEGLRRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGENRVTVKVEKGGICFGWMGRTLTVASAWC 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00044 603 ProSiteProfiles GRAS family profile. 235 603 IPR005202 -
Vium4288g00044 603 MobiDBLite consensus disorder prediction 213 239 - -
Vium4288g00044 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 244 596 IPR005202 -
Vium4288g00044 603 Coils Coil 167 187 - -
Vium4288g00044 603 Pfam GRAS domain family 245 602 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00044 Vium-Chr4288 406193 408324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00044 31 602 GRAS Transcription Factor Family AT5G52510 43.968 6.03e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium4288g00044 GRAS 8.2e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00044 - - vra:106769615 1007.28