Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00037 ATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAAATTTTTTGGAATGGAAGAGGGAAGGGGGTCAAAGAGAGAACTTGGTTATGCAACGCTACCACATTACTGGACGGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGCTAGTTAACATATTGAAACAGATGGACGCAAAGGATCCTTTTAGGATTGACATGACTGACAAGCTTTTGGAAAAACTCTACAACATGGGCGTTATTCCAACCAGGCAAAGCATCACACTATGTGAACGCTTAACTGTCTCATCCTTCTGTAGACGTAGGCTCTCAACTGTTCTGGTGCGATTAAAATTTGCTGAACACTTGAAAGAAGCTGTCACGTACATTGAGCAAGGGCATATAAGGGTTGGTCCAGAGACGGTGACAGACCCGGCTTTCCTTGTAACTAGGAACATGGAAGACTTCATTACATGGGTGGATTCATCCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAATTGGATGACTATGATTTAATGAATTAA 549 0.4026 MRKLKFHEKKLLKKVNFLEWKREGGQRENLVMQRYHITGRDDYKKYSGLCHMVQKLVNILKQMDAKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00037 182 SMART s4_6 107 170 IPR002942 GO:0003723
Vium4288g00037 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 178 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vium4288g00037 182 Gene3D - 107 182 IPR036986 GO:0003723
Vium4288g00037 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Vium4288g00037 182 FunFam U3 small nucleolar ribonucleoprotein IMP3 107 179 - -
Vium4288g00037 182 SUPERFAMILY Alpha-L RNA-binding motif 27 175 - -
Vium4288g00037 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Vium4288g00037 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Vium4288g00037 182 CDD S4 107 175 - -
Vium4288g00037 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00037 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 34.483 3.15e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00037 K14560 - gmx:100782389 358.607