Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00030 ATGCCAGTTGCAAAACTACCGGCCTCAGGCACAACCGGTTTCACAAAAACAGATGATGGAAATGATTCTTTAGATACAATATTCAGACAAGCAATTGGAAAAGAACCGTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTGCAGCACCGGTTGAAAAAGCTTGATAAGGATTCTAAAAAGAATAGGGAACTTTTAGGGGCATATTGGGATAAGCTCTCCATAGAAGAGGCAAAGGAAGTTGTTTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCGCAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCATCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTCGGATCAGCAGTGTCGATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACAAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAGTCTTGGCTTGCGGACAAGGATGCTGAAGCATTGAGATGCCAAAAGTTACTTGTGGAAGAGGAAGAAGCTGCTCAGAAAAGAAAAGCTGAGATTTTAGAGAGGAAACGGCAGAAAAAGCTCAGACAGAAAGAACACAAGGCAAAGGAGCAACTTGAAAACGACACAGAAACTAAAGGAAACATAAGCAGCGCAGGAGAGGATGTATCACCAGGAGAAGCATCTTTGGGTACATGCGACTTCGATGCACATAATCCAGATATTTTTGCGGATCATTCTCCTCCACCACCACATGTAACTTCTCACTGCCTAGACACTAATGATGTTATAGAAAAGGATACGCTGGCAGGGTATGATGATTGTGACACTGATCAGTATATAGAGCGGCAGACACTACCAGCACATAATCGCCCGGGCACAGTGCCTGCCAGATGGCAAGGGCTACCAAAATCACAATGGGCTAGAGCCAATGGTTTGAATGCAGGCCAGAATTCTCAACTGACGAAGCTTGGAGTTATTCAAAAGCATAGAACCAGCCATGATCTTAGGGCAGCTCCTATAAACAATGGCAGTAAGGTTTGGAGTCGAAAACCTAAAGCAGAATCTAATGATTTGGTTGTAAAAAACAAACTGCTGAAAGAACCAGACAAAGTTAAAAATCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGTAATTCTTGCCATTCCAGAGGTAATTTTATGGCACCCCAGCGGGATTGCTCGGCGGCAGGGAATCTGTCCAAGCTCAATACTGCTCAGGAGAAACCAGGAAGCAACGGTCGTTTAACAGCTAAGTTTTGGAGGCCTGTTAGCCAGCATGGAACTAAAGACCCATTTCCACTTCAAAATGGTGGGACAGAAGCTGATGCTATTAATGGAAAAATTGATGAAAATTCGTCTGGTCAAAGTAGTTTAAGGTTGTGTAGTGTAGAGGGTAATGATGATATTGATTTTGGGGACAATTTTTCCCATAATGTGGCAAAAGTAGATACAGAAAGCTTACGTCTATCCAGCCATGCTGCAGAATCCTTTCTTGCCCAAAGATGGAAAGAAGCTATCTCATCGGACCATGTAAAATTGGTTTTCACACCTGATTCTGAGCCTCGTGGAGGACAGTCTGTCCAGGATTGTGAACTAGCAGCAGATGCTTCTGATGCGGACAGATGTGGCGTTCTTGCAAGTACAGAGAACCTGTTGCCTGCAACCTCTGGAGTAGCAAGATCTAAACCCAAAACGAAGCCTGAAAAAGGAATGAAGATAAAGTACATTCCCAAACAAAAAACAGCAGCCTAG 2046 0.4272 MPVAKLPASGTTGFTKTDDGNDSLDTIFRQAIGKEPLLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKKNRELLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEQKNLVACTSFLLEQKLVKSWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKAKEQLENDTETKGNISSAGEDVSPGEASLGTCDFDAHNPDIFADHSPPPPHVTSHCLDTNDVIEKDTLAGYDDCDTDQYIERQTLPAHNRPGTVPARWQGLPKSQWARANGLNAGQNSQLTKLGVIQKHRTSHDLRAAPINNGSKVWSRKPKAESNDLVVKNKLLKEPDKVKNHEVLIGSVSVSLGNSCHSRGNFMAPQRDCSAAGNLSKLNTAQEKPGSNGRLTAKFWRPVSQHGTKDPFPLQNGGTEADAINGKIDENSSGQSSLRLCSVEGNDDIDFGDNFSHNVAKVDTESLRLSSHAAESFLAQRWKEAISSDHVKLVFTPDSEPRGGQSVQDCELAADASDADRCGVLASTENLLPATSGVARSKPKTKPEKGMKIKYIPKQKTAA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00030 681 Coils Coil 272 300 - -
Vium4288g00030 681 MobiDBLite consensus disorder prediction 652 681 - -
Vium4288g00030 681 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 680 - -
Vium4288g00030 681 MobiDBLite consensus disorder prediction 278 319 - -
Vium4288g00030 681 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Vium4288g00030 681 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00030 Vium-Chr4288 286266 292838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00030 19 678 C2H2 Transcription Factor Family AT4G25610 43.563 5.19e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4288g00030 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00030 - - gmx:100799153 1061.6