Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00029 ATGGGTAGCATCGTGGTGGAAGACGCCGATACTGACACAGTGTATGTGGCGGTGGGAAACAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTTACTCCCTCAATTCGTTCTCATGTGCAACAGACAGGAATCTCTCTGGGTATGAGCCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTTCTAGACCAATACATTCTTGATCTGGTTCCTTCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGCGAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAGCCTCATATGTACTAGGGTATATAGCAAGCATACTTCTGACATAGAGGGTGGGCCTGCATTGTTGGTGCTCAATTCAAATACAGAAAAGTCTACATCGAAATCGACTCTAGATGCATTGAAATATTTAGATTCTGGTGATATGAAAGAAATCCAAAGTATCAGTTCCAACCGTTCCTTAAATACAAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGCCAGATTTGACGTTTCATGAGGATGAAGCATTTGAAAGCCAGTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTTGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCACTTATGAACGAAATTTCTGAGTCCCAGTTTACGGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTCTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAACATTTGGTGAAGCGGATACTCCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTCATGATTTCGATCCGTCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTACGGTCAAGAGAGTCCATCAAAATTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCTATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGCATTATCCATGGGAATTTGAAACCTAGTAAAGTTCTCCTCGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTTCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTAAGGGATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGATTTTTCAGCTGGTGAATGGCCACTTTGTCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAAAATTGGTTGAACAGGCCAGACCTTGTGTCTGAAATTTGGAGTGTTCTGGAACCATTCAAAGCTATTCGCATTGACAAACCATATTTGATTTCAAAGAAGCTTCGTCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGCTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAACAACAGTAA 2208 0.4167 MGSIVVEDADTDTVYVAVGNNAEKTQQLLHWTVKNFSGKNVCLLHIHRPYSLNSFSCATDRNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPSGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIREQALLSCNIWFICKGSLICTRVYSKHTSDIEGGPALLVLNSNTEKSTSKSTLDALKYLDSGDMKEIQSISSNRSLNTKWSFNKVMDRSKLPDLTFHEDEAFESQCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMNEISESQFTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRTFGEADTPFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGQESPSKFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADANTIYNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLCQTELLAYLALRCCEKNWLNRPDLVSEIWSVLEPFKAIRIDKPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00029 735 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672|GO:0006468
Vium4288g00029 735 PANTHER OS02G0152300 PROTEIN 14 731 - -
Vium4288g00029 735 Coils Coil 259 307 - -
Vium4288g00029 735 ProSitePatterns Protein kinases ATP-binding region signature. 390 411 IPR017441 GO:0005524
Vium4288g00029 735 Pfam U-box domain 666 734 IPR003613 GO:0004842|GO:0016567
Vium4288g00029 735 SUPERFAMILY RING/U-box 663 735 - -
Vium4288g00029 735 CDD STK_N 13 169 - -
Vium4288g00029 735 ProSiteProfiles U-box domain profile. 665 735 IPR003613 GO:0004842|GO:0016567
Vium4288g00029 735 CDD RING-Ubox_WDSUB1-like 667 722 - -
Vium4288g00029 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 735 IPR013083 -
Vium4288g00029 735 SUPERFAMILY Protein kinase-like (PK-like) 360 645 IPR011009 -
Vium4288g00029 735 ProSiteProfiles Protein kinase domain profile. 384 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4288g00029 735 Gene3D Phosphorylase Kinase; domain 1 358 456 - -
Vium4288g00029 735 SMART Ubox_2 669 732 IPR003613 GO:0004842|GO:0016567
Vium4288g00029 735 Gene3D Transferase(Phosphotransferase) domain 1 457 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00029 Vium-Chr4288 272734 281967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00029 12 735 U-box Gene Family AT2G45910 40.652 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium4288g00029 PK_Tyr_Ser-Thr 7.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00029 - - pvu:PHAVU_007G072300g 1287.32