Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00028 ATGGGTAGCATCGTGGTGGAAGACGCCGATACTGACACAGTGTATGTGGCGGTGGGAAACAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTTACTCCCTCAATTCGTTCTACAGGAATCTCTCTGGGTATGAGCCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTTCTAGACCAATACATTCTTGATCTGGTTCCTTCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGCGAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAGCCTCATATGTACTAGGGTATATAGCAAGCATACTTCTGACATAGAGGGTGGGCCTGCATTGTTGGTGCTCAATTCAAATACAGAAAAGTCTACATCGAAATCGACTCTAGATGCATTGAAATATTTAGATTCTGGTGATATGAAAGAAATCCAAAGTATCAGTTCCAACCGTTCCTTAAATACAAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGCCAGATTTGACGTTTCATGAGGATGAAGCATTTGAAAGCCAGTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTTGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCACTTATGAACGAAATTTCTGAGTCCCAGTTTACGGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTCTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAACATTTGGTGAAGCGGATACTCCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTCATGATTTCGATCCGTCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTACGGTCAAGAGAGTCCATCAAAATTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCTATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGCATTATCCATGGGAATTTGAAACCTAGTAAAGTTCTCCTCGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTTCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTAAGGGATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGATTTTTCAGCTGGTGAATGGCCACTTTGTCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAAAATTGGTTGAACAGGCCAGACCTTGTGTCTGAAATTTGGAGTGTTCTGGAACCATTCAAAGCTATTCGCATTGACAAACCATATTTGATTTCAAAGAAGCTTCGTCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGCTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAACAACAGTAA 2196 0.4162 MGSIVVEDADTDTVYVAVGNNAEKTQQLLHWTVKNFSGKNVCLLHIHRPYSLNSFYRNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPSGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIREQALLSCNIWFICKGSLICTRVYSKHTSDIEGGPALLVLNSNTEKSTSKSTLDALKYLDSGDMKEIQSISSNRSLNTKWSFNKVMDRSKLPDLTFHEDEAFESQCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMNEISESQFTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRTFGEADTPFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGQESPSKFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADANTIYNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLCQTELLAYLALRCCEKNWLNRPDLVSEIWSVLEPFKAIRIDKPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00028 731 Pfam Protein tyrosine and serine/threonine kinase 385 633 IPR001245 GO:0004672|GO:0006468
Vium4288g00028 731 CDD RING-Ubox_WDSUB1-like 663 718 - -
Vium4288g00028 731 SUPERFAMILY RING/U-box 659 731 - -
Vium4288g00028 731 CDD STK_N 13 165 - -
Vium4288g00028 731 ProSiteProfiles Protein kinase domain profile. 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4288g00028 731 PANTHER OS02G0152300 PROTEIN 14 727 - -
Vium4288g00028 731 Coils Coil 255 303 - -
Vium4288g00028 731 Gene3D Phosphorylase Kinase; domain 1 354 452 - -
Vium4288g00028 731 Gene3D Transferase(Phosphotransferase) domain 1 453 647 - -
Vium4288g00028 731 ProSiteProfiles U-box domain profile. 661 731 IPR003613 GO:0004842|GO:0016567
Vium4288g00028 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 731 IPR013083 -
Vium4288g00028 731 SMART Ubox_2 665 728 IPR003613 GO:0004842|GO:0016567
Vium4288g00028 731 SUPERFAMILY Protein kinase-like (PK-like) 356 641 IPR011009 -
Vium4288g00028 731 ProSitePatterns Protein kinases ATP-binding region signature. 386 407 IPR017441 GO:0005524
Vium4288g00028 731 Pfam U-box domain 662 730 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00028 Vium-Chr4288 272733 281967 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00028 12 731 U-box Gene Family AT2G45910 40.652 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium4288g00028 PK_Tyr_Ser-Thr 7.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00028 - - pvu:PHAVU_007G072300g 1271.14