Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00027 ATGGGTAGCATCGTGGTGGAAGACGCCGATACTGACACAGTGTATGTGGCGGTGGGAAACAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTTACTCCCTCAATTCGTTCTCATGTGCAACAGACAGGAATCTCTCTGGGTATGAGCCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTTCTAGACCAATACATTCTTGATCTGGTTCCTTCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGCGAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAGCCTCATATGTACTAGGGTATATAGCAAGCATACTTCTGACATAGAGGGTGGGCCTGCATTGTTGGTGCTCAATTCAAATACAGAAAAGTCTACATCGAAATCGACTCTAGATGCATTGAAATATTTAGATTCTGGTGATATGAAAGAAATCCAAAGTATCAGTTCCAACCGTTCCTTAAATACAAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGCCAGATTTGACGTTTCATGAGGATGAAGCATTTGAAAGCCAGTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTTGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCACTTATGAACGAAATTTCTGAGTCCCAGTTTACGGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTCTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAACATTTGGTGAAGCGGATACTCCCTTCTCTTATCAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTACGGTCAAGAGAGTCCATCAAAATTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCTATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGCATTATCCATGGGAATTTGAAACCTAGTAAAGTTCTCCTCGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTTCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTAAGGGATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGATTTTTCAGCTGGTGAATGGCCACTTTGTCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAAAATTGGTTGAACAGGCCAGACCTTGTGTCTGAAATTTGGAGTGTTCTGGAACCATTCAAAGCTATTCGCATTGACAAACCATATTTGATTTCAAAGAAGCTTCGTCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGCTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAACAACAGTAA 2139 0.4165 MGSIVVEDADTDTVYVAVGNNAEKTQQLLHWTVKNFSGKNVCLLHIHRPYSLNSFSCATDRNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPSGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIREQALLSCNIWFICKGSLICTRVYSKHTSDIEGGPALLVLNSNTEKSTSKSTLDALKYLDSGDMKEIQSISSNRSLNTKWSFNKVMDRSKLPDLTFHEDEAFESQCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMNEISESQFTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRTFGEADTPFSYQIGEGRYGSVYKGLLRNMHVAIKMLPSYGQESPSKFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADANTIYNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRDVKCALEKENLKAVLDFSAGEWPLCQTELLAYLALRCCEKNWLNRPDLVSEIWSVLEPFKAIRIDKPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00027 712 Coils Coil 259 307 - -
Vium4288g00027 712 SUPERFAMILY Protein kinase-like (PK-like) 364 622 IPR011009 -
Vium4288g00027 712 SUPERFAMILY RING/U-box 640 712 - -
Vium4288g00027 712 Gene3D Transferase(Phosphotransferase) domain 1 344 635 - -
Vium4288g00027 712 CDD STK_N 13 169 - -
Vium4288g00027 712 PANTHER OS02G0152300 PROTEIN 14 708 - -
Vium4288g00027 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 712 IPR013083 -
Vium4288g00027 712 CDD RING-Ubox_WDSUB1-like 644 699 - -
Vium4288g00027 712 ProSitePatterns Protein kinases ATP-binding region signature. 367 388 IPR017441 GO:0005524
Vium4288g00027 712 ProSiteProfiles U-box domain profile. 642 712 IPR003613 GO:0004842|GO:0016567
Vium4288g00027 712 SMART Ubox_2 646 709 IPR003613 GO:0004842|GO:0016567
Vium4288g00027 712 Pfam U-box domain 643 711 IPR003613 GO:0004842|GO:0016567
Vium4288g00027 712 Pfam Protein tyrosine and serine/threonine kinase 365 614 IPR001245 GO:0004672|GO:0006468
Vium4288g00027 712 ProSiteProfiles Protein kinase domain profile. 361 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00027 Vium-Chr4288 272733 281967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00027 12 712 U-box Gene Family AT2G45910 39.447 6.87e-176 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium4288g00027 PK_Tyr_Ser-Thr 5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00027 - - pvu:PHAVU_007G072300g 1300.42