Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00025 ATGCTCTCATTCTCTTTCACCGCACGTTCTGGTGTTAGGGTTTCTCCGTCAATCAGCGCCAGAGATATGGCTCCCAAACCGCCTAGTACGGGCCTTTTTGTTGGACTGAACAAGGGTCACGTCGTCACTAAGAAGGAATTGCCTTCACGCCCCTCAGATCGCAAGGGGAAAACAAGCAAAAGGGTGCACTTTGTGAGGAACCTCATCAGAGAGGTTGCTGGTTTTGCACCATATGAAAAACGTATAACCGAGTTACTTAAGGTTGGGAAGGATAAGAGGGCTCTTAAGGTTGCCAAGAGAAAGCTTGGAACTCACAAACGTGCCAAGAAGAAGCGTGAGGAGATGTCCAACGTTCTCCGTAAAATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAA 399 0.4837 MLSFSFTARSGVRVSPSISARDMAPKPPSTGLFVGLNKGHVVTKKELPSRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00025 132 MobiDBLite consensus disorder prediction 15 35 - -
Vium4288g00025 132 MobiDBLite consensus disorder prediction 101 132 - -
Vium4288g00025 132 FunFam 60S ribosomal protein L36 23 128 - -
Vium4288g00025 132 Pfam Ribosomal protein L36e 30 123 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vium4288g00025 132 Gene3D 60S ribosomal protein L36 22 130 IPR038097 -
Vium4288g00025 132 PANTHER 60S RIBOSOMAL PROTEIN L36 17 130 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vium4288g00025 132 MobiDBLite consensus disorder prediction 109 132 - -
Vium4288g00025 132 ProSitePatterns Ribosomal protein L36e signature. 77 87 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00025 Vium-Chr4288 257699 258967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00025 29 132 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 83.654 1.73e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00025 K02920 - gmx:100785591 218.009