Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00022 ATGTCAGAATCTGAGGAAGAAAATACAGACCGTGTTCCAAGGTCAAAGCCCGCAGAGGAAGTTGGCTGCACCATGGACTTCGATCTTGACTTAGAAACTTCATGGCCTTTGGATCACATGTCCTTTGGCTCCAATCCCATGTCACCTTTTCTGTTCTCCTCCAACTCTGACCAGCCTTACTCTCCTCTGTGGGCTTTCTCTGATGGAGAAGACGCCAAGTTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATTGATGAAAAGCCAGAGGAGAATGATGACAACAAGAAGCTTTTGCCACCACTTGCGCCTATGCCACCACTGGAAAATGTGGGCGGATACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACACAGTAATGGGCTGCATCAGTATAGAACGGTCTCTCTGATGTACATGTTTGCTGTGGATGGGGAGAACGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTGTATTATTCCAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGATCTTTGGCTCTGCCCGTGTTTGAACCTGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATACTGACAGTGGTTTGTGAAACTCATAATTTACCTCTGGCGCAAACATGGATTCCTTGTAAGCATCGGAGTGTCTTGGCCCAAGGTGGTGGTGTGAAGAAAATTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACGTAGCATTCTATATTATAGATGCCCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAGCATTACCCAATTCTGCAAGACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCACGAACAAAAGACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATCGAAGCAACAATTGAAAGAATTCACACGAGGCATGAATCCATTCCAATTGCCCCATCTATTAGATCACATCCTAGACCTGATACTTCACCATATATGGAGGAGGAAGTTTCACTTGATCCATCAGAGCAACACATATTGATGTACTGTAATGGTACCAATCATGGAGCGAATCTCAGTGATAAAGCAGGTGGGAAAATTGATCATATGATTACTTTAGAGACTAAAACCTCAAAGAAACCCTTAGAGAGGAAGCGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGATGGCCATCTCGAAAGATCAACAAGGTTAATCGTTCCCTGTCCAAGCTGAAGCGTGTTATTGAATCTGTCCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCCTTCCTGAACCATCTACTCCAAACAAGTTCAGCCAGCCAGTCTCAATGAGCATTAGACCATCAGAACCTCAGATGAAAGTGAATGAATTGAATGCCTCCAAAGAACTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAGGAAGAATACATAATCTTGAGAGAGTTACCAATGATAAAGGAGGTTCTACTCAGGAGATTGGGAAAGAACCGAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTACTTCTCACGGTTCATGGCATGACAGTATCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGACCAATGTGCAGTGCTAAGGAGATCACCAGAGTCAACACTGCAGCCAGCCACTAATACACCGAACCAGGCCACTCCTTTCTGTATGCCAGAATTTGTGGCTGCAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCTTAGATTTGTCTCCCAAGCAAAGCATGGGTACTCCTAATAAAGCAGTGACACCTTTTGCAGCAACGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCAATGACATGTGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTTGAGGTGGGTACGTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTGTCAAGATCACCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGAGAGTGA 2967 0.4351 MSESEEENTDRVPRSKPAEEVGCTMDFDLDLETSWPLDHMSFGSNPMSPFLFSSNSDQPYSPLWAFSDGEDAKFPASAFSDCHKIFPCDSNSIDEKPEENDDNKKLLPPLAPMPPLENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFAVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKICSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSSITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRVTDFHEQKTLLASILATMKQHFQSLKIASGVELEDGSIEIIEATIERIHTRHESIPIAPSIRSHPRPDTSPYMEEEVSLDPSEQHILMYCNGTNHGANLSDKAGGKIDHMITLETKTSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKFSQPVSMSIRPSEPQMKVNELNASKELETNREAGMEDQLVGGRIHNLERVTNDKGGSTQEIGKEPKRTRTGSGSSEDSTNPTSHGSWHDSIPNESSPVKDIFITSNHDQCAVLRRSPESTLQPATNTPNQATPFCMPEFVAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKAVTPFAATKEMKTVTIKATYREDIIRFRVSMTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSPGSNIIRVLVHDITSNLGSSCESSGE 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00022 988 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 91 111 - -
Vium4288g00022 988 SMART PB1_new 893 975 IPR000270 GO:0005515
Vium4288g00022 988 Gene3D - 890 974 - -
Vium4288g00022 988 Pfam RWP-RK domain 584 632 IPR003035 -
Vium4288g00022 988 ProSiteProfiles PB1 domain profile. 893 975 IPR000270 GO:0005515
Vium4288g00022 988 SUPERFAMILY CAD & PB1 domains 889 978 - -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 750 776 - -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 1 21 - -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 673 693 - -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 720 776 - -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 91 105 - -
Vium4288g00022 988 CDD PB1_NLP 894 974 IPR034891 -
Vium4288g00022 988 MobiDBLite consensus disorder prediction 672 693 - -
Vium4288g00022 988 PANTHER PROTEIN NLP8 56 987 IPR045012 GO:0003700
Vium4288g00022 988 FunFam RWP-RK domain-containing protein 890 974 - -
Vium4288g00022 988 Pfam PB1 domain 893 974 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00022 Vium-Chr4288 238559 242916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00022 259 988 NLP Transcription Factor Family AT4G24020 53.045 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium4288g00022 PB1 6.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00022 - - gmx:100786118 1769.98