Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00017 ATGAATATCCTCGTGGCGCTCGCATTCTTGTGCCTGGCAACATTGGCGCCATGGCGCGTTCGCTCGCAACAACAGAGGCTTCTCGTGAACATGACGCTCGTTACCAAGGCCAAAGCTAGCGGCGCTCTGTGTTTGGACGGAAGTTTACCGGCGTATCACTTGGACAGAGGATTCGGTGCTGGTGAAAACAACTGGCTTCTTCAATTTGAGGGAGGTGGATGGTGCAATGACTTAAAATCATGCTTCGAGAGAGCCAAAACTCGGAGGGGTTCATCAAATTATATGGTCAAATTGGAGGTGTTTTCTGGTATTTTAAGCAACAATGCCACCCTTAATCCTGATTTTTACAACTGGAACCGTGTAAAGCTGAGATACTGTGATGGAGCCTCGTTTACAGGAGACGCTGTGTTCTCTAACAAGACAACAACTCTTCATTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTGACGACCTTCTACCACAAGGTTTGGGAAAGGCACGGAAGGCTTTGCTTTCAGGTTGCTCAGCAGGAGGTTTAGCAACCTTTCACCATTGTGACGACTTCGCCAAGCGTTTGCCAACGGATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAAAGAGACATCAGTTTGAACCACACCATGAGGTTTCTCGTTAAAAGTCTAGTTCGGTTACAGGGGATAGAGCAGAACCTGAATAGAAATTGCACCAGAGAACAGTACTTTCCAGCCTTGTGCTTCTTTCCACAATATGCGTTGAAATACATATCAACACCATATTTTATTTTGAACTCTGCCTATGATGTATTCCAATTCCATCATATATTGGCGCCACCCTCTGCGGATTTGCACGGACACTGGAACAAGTGCAGGCTGAACCCGGCTGCATGTACAGCAGACCAAATTGCTATATTGCAAGGTTTTAGGCTCGACATGCTTGGAGCTTTGAAACCATTCTATATGAATTCAAGAAGAGGGGGGGTGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAACAACAGGATACATGGTTTAGAGATGATTCTCCAAGAATAAACAACAAGACTATTGCAGAAGCGGTTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGACTGTCCATATCCATGCGATGGAACTTGTCATAATACTATACCCGAACCTAAGCTCAGGTGA 1203 0.4439 MNILVALAFLCLATLAPWRVRSQQQRLLVNMTLVTKAKASGALCLDGSLPAYHLDRGFGAGENNWLLQFEGGGWCNDLKSCFERAKTRRGSSNYMVKLEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGDAVFSNKTTTLHFKGQKIWEAIIDDLLPQGLGKARKALLSGCSAGGLATFHHCDDFAKRLPTDASVKCLSDAGFFLDERDISLNHTMRFLVKSLVRLQGIEQNLNRNCTREQYFPALCFFPQYALKYISTPYFILNSAYDVFQFHHILAPPSADLHGHWNKCRLNPAACTADQIAILQGFRLDMLGALKPFYMNSRRGGVFINSCFAHCQSEQQDTWFRDDSPRINNKTIAEAVGDWYFSRNISKEIDCPYPCDGTCHNTIPEPKLR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00017 400 Pfam Pectinacetylesterase 22 375 IPR004963 GO:0016787
Vium4288g00017 400 PANTHER NOTUM-RELATED 12 392 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00017 Vium-Chr4288 173340 194931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00017 1 395 Carbohydrate Esterase AT5G23870 64.736 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00017 K19882 - gmx:100794453 709.138