Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00012 ATGGAGTCTCTAGGGCTAGCTGGGGTTCTTGTTGCCTTCTCGGCTGCACTTTGCCTCTTCTTGCTCTTCATACTAACTTTTTCTTGGTGGGTTCTCCCTAACCAAACACTTAAGAAGCTTAAGAAATGTGGGTTGGGAGGTCCAATCCCAAGTTTTCCTCTTGGAAACATTAAAGAGATGAAAACAAAGAATAACATTCAATCTTCAGTTGCATCCTCAAATCTCACTCATGATATACACTCTAACGTTTTCCCCTACTTTTCTAGCTGGCAGAAATCACATGGTAAAGTTTTTGTGTACTGGTTGGGCACGGAGCCATTCCTGTACGTTGCAGAGCCAGAGTTCTTGAAGAAAATGTCGACAGTGGTGGTGGCCAAGCGATGGGGAAAACCAAGTGTGTTTAGAACTGACAGAGACCCCATGTTTGGGAGTGGTTTGGTCATGGTTGAGGGCAACGAATGGGTTCGTCACAGGCACATTGTTGCCCCTGCCTTCAATCCCATTAACTTGAAGGACATGGCGAACATGATGGTTGATTCCACGAATCAAATGATAGACAGATGGTTTACCCGAATAAACTCTGGGAACCCCGAAATCGACGTGGAGAGAGAGATTATAGCAACGGCTGGAGAGATCATAGCAAGAACAAGTTTTGGCATGAAAGATGAGAATGCGAGAGATGTTTTCGACAAATTAAGAGCCTTGCAAATGACCCTTTTTAAGACCAATCGATACGTAGGTGTTCCCTTTGGGAAGTATTTCAACGTAAAGAAAACATTAGAGGCGAAGAAACTCGGGAAAGAAATCGACGAACTGTTGTTGTCGATCATAGAATCTCGGAAGAAGTCGGGGACGAAAAATGGTCAGCAAGATCTGTTAGGTCTGTTGCTGCAAGAAAATCACGAGGTCGATGGAAGGTCGGGTAAGACGTTAACATCGCGAGAAGTTGTTGACGAATGCAAGACCTTCTTCTTCGGAGGGCATGAAACCACAGCACTTGCCATCACGTGGACCTTGCTGCTTCTGGCCATGCACCCAGATTGGCAAACCCAGTTGAGAGACGAGATACGAGAGGTGGTGGGGAACTCTGAACAACTTGATATTTCTATGCTCTCTGGTTTAAAAAAGATGAAATGGGTTATGAATGAAGTTCTAAGACTGTACCCACCAGCACCAAACGTGCAGAGGCAAGCAAGAGAAGACATAAAAGTGGATGATGTAACGGTGGCCGATGGAACGAACATGTGGATAGATGTGGTGGCCATGCACCATGACCCTGAACTATGGGGAGAGGATGCGAACGAGTTCAGGCCAGAGAGGTTCATGAATGATGTGAACGGTGGATGCAAGCACAAGATGGGTTATTTGCCTTTTGGGTTTGGAGGGAGAATGTGTGTTGGTAGAAATCTTACCTTTATGGAGTACAAGATCGTTTTAACCCTTCTTCTCTCTAGGTTCACTTTCAAGACTTCACCTGCTTACAATCACTCACCGTCTATTATGCTCTCCCTAAGGCCTAGCTATGGTCTTCCACTCATTGTTCATCCACTTTAA 1554 0.4517 MESLGLAGVLVAFSAALCLFLLFILTFSWWVLPNQTLKKLKKCGLGGPIPSFPLGNIKEMKTKNNIQSSVASSNLTHDIHSNVFPYFSSWQKSHGKVFVYWLGTEPFLYVAEPEFLKKMSTVVVAKRWGKPSVFRTDRDPMFGSGLVMVEGNEWVRHRHIVAPAFNPINLKDMANMMVDSTNQMIDRWFTRINSGNPEIDVEREIIATAGEIIARTSFGMKDENARDVFDKLRALQMTLFKTNRYVGVPFGKYFNVKKTLEAKKLGKEIDELLLSIIESRKKSGTKNGQQDLLGLLLQENHEVDGRSGKTLTSREVVDECKTFFFGGHETTALAITWTLLLLAMHPDWQTQLRDEIREVVGNSEQLDISMLSGLKKMKWVMNEVLRLYPPAPNVQRQAREDIKVDDVTVADGTNMWIDVVAMHHDPELWGEDANEFRPERFMNDVNGGCKHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTLLLSRFTFKTSPAYNHSPSIMLSLRPSYGLPLIVHPL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00012 517 Pfam Cytochrome P450 80 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Vium4288g00012 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 Gene3D Cytochrome P450 30 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4288g00012 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 22 509 - -
Vium4288g00012 517 SUPERFAMILY Cytochrome P450 77 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00012 Vium-Chr4288 133815 136215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00012 12 517 Cytochrome P450 AT5G52400 59.766 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00012 - - gmx:100785284 924.85