Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00008 ATGCAGTCTCCAACAACACTCACGGGATTGCTCCACCGCGTCGCCGGAATATTCCCTTCCCACCATGCCGTCTCTGTCTCAGGCAAATTCCAACTCACACACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGTACGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCATCGCACTCACCTTCCCCAACACCGTCGAGTTTATTATAACGTTTCTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACGCGGCTTACACGGCGGAAGAGTTCGAGTTTTATTTATCCGACTCGGAGTCAAAGCTGTTAATAACATCAAAAGAAGGGAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCCTCACTCGACGAAGCAGAAGCCGAAGAGCTCAGTCTCTCTCTGAGTTACACCGAGTCATCGACCGCCTCGATTTCCGAACTCGTTAACGACGAGGCCGACGTGGCATTGTTCCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGAACAACTTGGCCTCGTCGGTGGAGAACATCAAGTCCGTGTACAAACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTAATCGCCGCGTTGCTGAGTTCACTAGCCGCCGGAGCCTCCGTGACGCTCCCGGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACGTACAACGCCACGTGGTACACCGCGGTTCCTACGGTACACCAAATATTGTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTTATATTGGAGCGGTTGGAGGAGGCGTTTGAGGCACCGGTTTTGGAGGCTTATGCTATGACGGAAGCGTCGCATTTAATGTCGACGAATCCATTACCCGAAGATGGGCCTCATCGGGCCGGGTCCGTTGGAAAGCCCGTGGGCCAGGAAATGGCAATATTAGGCGAGAAGGGTGAGATTCTAAAGAATGATGTGAACGGTGAGGTTTGTATTAGGGGACCCAACGTTACCAAAGGGTATAAAAATAACCCTGATGCGAATATTTCTGCCTTTGAATACGGGTGGTTCCACACTGGTGATACCGGGTTTTTTGATTCGGATGGGTATTTGCATCTGGTGGGTCGGATCAAGGAGCTTATTAACCGTGGAGGTATATATTTATACTTTTATCAACCGCTCACTTATCATGCCACCCACATATTTATGCATCTTAAACAGCATTACATACTTGCAATGTTAGAGGGTTTAAAATTTTAA 1362 0.5294 MQSPTTLTGLLHRVAGIFPSHHAVSVSGKFQLTHSRLHHLVERAAVRLLSAGIKPGDVIALTFPNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLITSKEGNEPAQAAASKLSIPVSTASLDEAEAEELSLSLSYTESSTASISELVNDEADVALFLHTSGTTSRPKGVPLTQNNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAALLSSLAAGASVTLPAAGRFSASSFWSDMLTYNATWYTAVPTVHQILLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEAFEAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILGEKGEILKNDVNGEVCIRGPNVTKGYKNNPDANISAFEYGWFHTGDTGFFDSDGYLHLVGRIKELINRGGIYLYFYQPLTYHATHIFMHLKQHYILAMLEGLKF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00008 453 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Vium4288g00008 453 Gene3D - 1 410 IPR042099 -
Vium4288g00008 453 PANTHER ACYL-COA SYNTHETASE 18 423 - -
Vium4288g00008 453 FunFam Peroxisomal-coenzyme A synthetase 6 410 - -
Vium4288g00008 453 Pfam AMP-binding enzyme 16 417 IPR000873 -
Vium4288g00008 453 SUPERFAMILY Acetyl-CoA synthetase-like 5 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00008 Vium-Chr4288 60253 61722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00008 24 445 Monolignol Biosynthesis Gene Families AT1G65060 30.892 6.38e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00008 K22133 - gmx:100783685 678.707