Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4288g00007 ATGCAGGCTCCAACAACACTCACGGGATTGCTCCACCGCGTCGCCGGAATATTCCCTTCCCACCATGCCGTCTCTGTCTCAGGCAAATTCCAACTCACACACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGTACGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCATCGCACTCACCTTCCCCAACACCGTCGAGTTTATTATAACGTTTCTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACGCGGCTTACACGGCGGAAGAGTTCGAGTTTTATTTATCCGACTCGGAGTCAAAGCTGTTAATAACATCAAAAGAAGGGAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCCTCACTCGACGAAGCAGAAGCCGAAGAGCTCAGTCTCTCTCTGAGTTACACCGAGTCATCGACCGCCTCGATTTCCGAACTCGTTAACGACGAGGCCGACGTGGCATTGTTCCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGAACAACCTGGCCTCGTCGGTGGAGAACATCAAGTCCGTGTACAAACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTAATCGCCGCGTTGCTGAGTTCACTAGCCGCCGGAGCCTCCGTGACGCTCCCGGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACGTACAACGCCACGTGGTACACCGCGGTTCCTACGGTACACCAAATATTGTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTTATATTGGAGCGGTTGGAGGAGGCGTTTGAGGCACCGGTTTTGGAGGCTTATGCTATGACGGAAGCGTCGCATTTAATGTCGACGAATCCATTACCCGAAGATGGGCCTCATCGGGCCGGGTCCGTTGGAAAGCCCGTGGGCCAGGAAATGGCAATATTAGGCGAGAAGGGTGAGATTCTAAAGAATGATGTGAACGGTGAGGTTTGTATTAGGGGACCCAACGTTACCAAAGGGTATAAAAATAACCCTGATGCGAATATTTCTGCCTTTGAATACGGGTGGTTCCACACTGGTGATACCGGGTTTTTTGATTCGGATGGGTATTTGCATCTGGTGGGTCGGATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCCGTCCTTCTATCTCATCCAGAAATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGATAAATATGGCGAAGAGATAAAGTGTGCGATAATCCGAAAAGAAGGATCAAAGATAGATGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAATCTTGCAAGCTTCAAAGTCCCTAAAAAGGTATTCATCACTGATTCTTTACCCAAGACCGCCACTGGCAAGATTCTGAGACGTCTTGTAGCACAACACTTCTTTTCTCAAACTTGA 1548 0.5271 MQAPTTLTGLLHRVAGIFPSHHAVSVSGKFQLTHSRLHHLVERAAVRLLSAGIKPGDVIALTFPNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLITSKEGNEPAQAAASKLSIPVSTASLDEAEAEELSLSLSYTESSTASISELVNDEADVALFLHTSGTTSRPKGVPLTQNNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAALLSSLAAGASVTLPAAGRFSASSFWSDMLTYNATWYTAVPTVHQILLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEAFEAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILGEKGEILKNDVNGEVCIRGPNVTKGYKNNPDANISAFEYGWFHTGDTGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPEIAQAVAFGVPDDKYGEEIKCAIIRKEGSKIDEAEVQRFSKKNLASFKVPKKVFITDSLPKTATGKILRRLVAQHFFSQT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4288g00007 515 Gene3D - 411 512 IPR045851 -
Vium4288g00007 515 SUPERFAMILY Acetyl-CoA synthetase-like 5 513 - -
Vium4288g00007 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
Vium4288g00007 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Vium4288g00007 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
Vium4288g00007 515 FunFam 4-coumarate--CoA ligase 2 413 514 - -
Vium4288g00007 515 Gene3D - 1 410 IPR042099 -
Vium4288g00007 515 FunFam Peroxisomal-coenzyme A synthetase 6 410 - -
Vium4288g00007 515 Pfam AMP-binding enzyme 16 417 IPR000873 -
Vium4288g00007 515 PANTHER ACYL-COA SYNTHETASE 18 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4288g00007 Vium-Chr4288 54936 57660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4288g00007 5 514 Monolignol Biosynthesis Gene Families AT4G05160 31.048 5.91e-62 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4288g00007 K22133 - gmx:100783685 850.121