Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00055 ATGAACGGCAGTTCCAGCGAAAGCAAGACAAGGGACATGGACGGGCAGCTGGCGGGGCTGGGCTACAAAGTCCGCTCATCTGAGCTCTGTCAAGTGGCTGAGAATATGGAACGTTTAGAGAACGCCATCAACACTGTCAACTCATCCAGGGACATTTCTCAAGTAGTCTCCGACGCACTCCTCTACGATCCCTCCAACATAGGTTTAGGTTCCTGGGTCGACACGCTTCTCTCCGAGCTCGACCAAACCGTCTCGTTGCCCTACGATCTATCTTCGGACCTACCCGATTTGCCCACGGATCCAAATCGCCAACTGGGGATGGTAACCACCGTCGAAGAAGACTCCGGGATAAGACTCGTTCACACGCTCATCACGTGTGCGGATTCCGTGCAACGTGGCGACCTCGCATTCGCGGGCTCCCTCATCGAGAGCATGCAGGCACTGCTAGCTCACGTGAACACCTCCTGCGGCATCGGGAAGGTCGCCGGCTACTTCATCGACGCCTTACGCCGCCGAATCTCGTCTCCGCAAAGCGCAGCGTTTCCAACCTCCCCCTACGAGAACGAAGTTCTCTACCACCACTACTACGAGGCCTGCCCCTACCTAAAGTTCGCGCACTTCACTGCGAACCAGGCGATCCTTGAAGCGTTCAACGGCCACGACTGCGTCCACGTCATCGATTTCAACCTGATGCAGGGGCTCCAGTGGCCGGCTCTCATACAAGCGCTAGCACTCCGCCCGGGAGGTCCGCCGTCGCTGAGGCTGACCGGCGTGGGACCTCCCTCGCCGGACGAGCGAGACACACTGCGCGAGATCGGCGCGCGACTGGCGGAGCTGGCGCACTCGGTGAACGTGCGGTTCACGTTCCGCGGAGTGGCAGCGTGGCGGCTGGAGGACGTGAAGCCATGGATGCTGCAGGTGAGTCCGAAGGAGGCGGTGGCAGTGAACTCGATCATGCAGCTACACCGCGTGCTTGGTTCGGGAATCGATACGGTTCTCGGCTGGATCCGAAGTCTAAACCCAAAGATCGTGACGGTTGTGGAGCAGGAAGCGAACCACAACGGGGAAGGGTTTCTGGAGCGGTTCACGGAGGCTCTGCACTACTACTCCACCGTCTTCGACTCGCTGGAAGCATGTTCGGTGGAGCCGGACAAGGGTCTCGCCGAGATGTACCTGCAGAGGGAGATTTGCAACGTGGTGTGCTGTGAGGGACCGGCGCGACTGGAGCGGCACGAGCCGCTGGCGAAATGGAGGGAGCGGCTGGGCAGAGCCGGATTCAGGCCCTTGCATTTGGGCTCGAACGCTTACAAACAAGCGAGCATGTTGTTGACTCTGTTCTCAGCCGAGGGTTACTGCGTGGAAGAGAATCAAGGGTGTTTGACTCTGGGTTGGCATAGCCGGCCCCTGATTGCGGCTTCAGCTTGGCAAGCCGCGCCGCTAAGAGAGGGTGAAACGGTGCGTTTCCAGCGCTGA 1473 0.5961 MNGSSSESKTRDMDGQLAGLGYKVRSSELCQVAENMERLENAINTVNSSRDISQVVSDALLYDPSNIGLGSWVDTLLSELDQTVSLPYDLSSDLPDLPTDPNRQLGMVTTVEEDSGIRLVHTLITCADSVQRGDLAFAGSLIESMQALLAHVNTSCGIGKVAGYFIDALRRRISSPQSAAFPTSPYENEVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRVLGSGIDTVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEACSVEPDKGLAEMYLQREICNVVCCEGPARLERHEPLAKWRERLGRAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAAPLREGETVRFQR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00055 490 ProSiteProfiles GRAS family profile. 110 476 IPR005202 -
Vium4284g00055 490 Gene3D - 12 80 IPR038088 -
Vium4284g00055 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 472 IPR005202 -
Vium4284g00055 490 SMART DELLA_2 14 90 - -
Vium4284g00055 490 Pfam Transcriptional regulator DELLA protein N terminal 14 83 IPR021914 -
Vium4284g00055 490 Pfam GRAS domain family 119 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00055 Vium-Chr4284 356561 358313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00055 5 476 GRAS Transcription Factor Family AT1G14920 47.013 7.99e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium4284g00055 GRAS 3.9e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00055 K14494 - gmx:100803245 782.326