Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00054 ATGTTGCAGGATGTTTTTGATCAGCCACTTCCACCAAAGGCCGAACCGCAACAGCAAGTCCCCATTGAAGAAATTTCAAGCCCTTTTAGTAGTGCTCGAATTTTCGAATTTTGTAACGCAGAATTTTTCCCAGAGGCTTTGCCAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCGTATGCCACAACAAACAAATCTTTAACTGTAGATGTAGAAAATAAATTGAATAGCAATAGCAACACAGTCACCACGCCAACTAGCATTACCACCACCAACAACAACAACACAACCAACAGTAGTAACCTGTCTATTATCTTAGACCCCCAAGATGAAATGGACAATAATGACATCGCTGCCTCCATAGACTTCTCACTATCTCCATCTTTCAATGTTCCTCCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTATGTGCAGCCTCAGGTCCAATTACCAGCATTTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACCCCGTTGCACCTCCACTTATGGGGGCTCCATTACCTTCTGTATTTGAAGAGGATTGCATATCTTCTGTTTCTTCTTATGTGCCTCTCAACCCTTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTACCGGCCCCCTTACTAGCGCCTTATCAACGGATAGTTCTGGATATTTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGCGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAGCCAGCAACTAGTTCCCGGGGGTGGTAGTTCTGCCACTCTAACACCTGAAATCTCTAACTTAGAGGACTCCTCATTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTCGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCATGAAGATGATGACGAAGAAGAAGTAGTTGTGAAGGATGAAGATGATATGGTTGATTCCTCAGATATTTTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1257 0.4288 MLQDVFDQPLPPKAEPQQQVPIEEISSPFSSARIFEFCNAEFFPEALPNSEVTSSSNCCYEENSSYATTNKSLTVDVENKLNSNSNTVTTPTSITTTNNNNTTNSSNLSIILDPQDEMDNNDIAASIDFSLSPSFNVPPFLPVTSQQEQFDFSYVQPQVQLPAFSVVEGFSQYPTDPVAPPLMGAPLPSVFEEDCISSVSSYVPLNPSSPCTYLSPGMPPYMPTGPLTSALSTDSSGYFGGNILLGSELQTQELEYQGENGRMYCTDSIQRAFNPPDLQALGTESQQLVPGGGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEDDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00054 418 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Vium4284g00054 418 MobiDBLite consensus disorder prediction 1 22 - -
Vium4284g00054 418 Pfam CCT motif 320 362 IPR010402 GO:0005515
Vium4284g00054 418 MobiDBLite consensus disorder prediction 355 377 - -
Vium4284g00054 418 MobiDBLite consensus disorder prediction 355 384 - -
Vium4284g00054 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 45 379 IPR045281 GO:0009909
Vium4284g00054 418 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00054 Vium-Chr4284 351543 355279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00054 290 369 C2C2-CO-like Transcription Factor Family AT5G24930 38.824 6.29e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4284g00054 CCT 3.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00054 - - gmx:100803778 673.7