Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00034 ATGTATTGGGGAGTTATGGCAGGCAACATGGGATGGGGTGTGATAGAGGAACAAGGATGGAGGAAGGGTCCTTGGACTGCTGAAGAAGACAGATTGCTCATTCAGTATGTCAGATTGCATGGTGAAGGCAGATGGAACTCTGTTGCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGATGGGTGAATTACCTGAGACCAGACCTAAAGAAGGGTCAGATAACACCACAGGAAGAAAGCATAATTCAGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGGACCCATTTCAAGAAAAAGGCTAAAAGCCCTTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCAAGGAGGCAGCAATTTCAACAGCAACAACTGCAGTTGAAGCATCAGCAGCAGGTTCAGCAGCAGCAGCAATTCCAATTCAACTTGGACATAAAAGGGATCATAAACTTGCTTGAAGAAAATGATCACAGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTTAACATGTGTCCAAACACTTCAGAGCAGCAGGGTTACTTCTACTCTATGTTCAATGTCAGTGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTCTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCAAGTGCTACAAGCAAAACTAGTTTACACAATTTAGTCACTCCTTTCAGTTAA 786 0.444 MYWGVMAGNMGWGVIEEQGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARIRSSRRQQFQQQQLQLKHQQQVQQQQQFQFNLDIKGIINLLEENDHRVPSTSQETQEMVNMCPNTSEQQGYFYSMFNVSDNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKTSLHNLVTPFS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00034 261 Gene3D - 79 123 - -
Vium4284g00034 261 CDD SANT 24 69 IPR001005 -
Vium4284g00034 261 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vium4284g00034 261 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vium4284g00034 261 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Vium4284g00034 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 234 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium4284g00034 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Vium4284g00034 261 SMART sant 74 122 IPR001005 -
Vium4284g00034 261 SMART sant 21 71 IPR001005 -
Vium4284g00034 261 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vium4284g00034 261 Gene3D - 22 74 - -
Vium4284g00034 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vium4284g00034 261 CDD SANT 79 120 IPR001005 -
Vium4284g00034 261 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vium4284g00034 261 FunFam MYB-related transcription factor 79 123 - -
Vium4284g00034 261 FunFam Myb transcription factor 22 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00034 Vium-Chr4284 232250 233484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00034 17 260 MYB Transcription Factor Family AT4G13480 51.301 6.04e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4284g00034 Myb_DNA-binding 7.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00034 K09422 - gmx:100782089 445.662