Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00033 ATGGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGATGGGTGAATTACCTGAGACCAGACCTAAAGAAGGGTCAGATAACACCACAGGAAGAAAGCATAATTCAGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGGACCCATTTCAAGAAAAAGGCTAAAAGCCCTTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCAAGGAGGCAGCAATTTCAACAGCAACAACTGCAGTTGAAGCATCAGCAGCAGGTTCAGCAGCAGCAGCAATTCCAATTCAACTTGGACATAAAAGGGATCATAAACTTGCTTGAAGAAAATGATCACAGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTTAACATGTGTCCAAACACTTCAGAGCAGCAGGGTTACTTCTACTCTATGTTCAATGTCAGTGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTCTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCAAGTGCTACAAGCAAAACTAGTTTACACAATTTAGTCACTCCTTTCAGTTAA 633 0.4344 MGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARIRSSRRQQFQQQQLQLKHQQQVQQQQQFQFNLDIKGIINLLEENDHRVPSTSQETQEMVNMCPNTSEQQGYFYSMFNVSDNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKTSLHNLVTPFS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00033 210 Gene3D - 2 23 - -
Vium4284g00033 210 CDD SANT 28 69 IPR001005 -
Vium4284g00033 210 Gene3D - 28 72 - -
Vium4284g00033 210 SUPERFAMILY Homeodomain-like 4 75 IPR009057 -
Vium4284g00033 210 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Vium4284g00033 210 FunFam MYB-related transcription factor 28 72 - -
Vium4284g00033 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Vium4284g00033 210 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 183 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium4284g00033 210 SMART sant 23 71 IPR001005 -
Vium4284g00033 210 Pfam Myb-like DNA-binding domain 24 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00033 Vium-Chr4284 227251 228723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00033 2 209 MYB Transcription Factor Family AT4G13480 46.352 1.80e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium4284g00033 Myb_DNA-binding 5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00033 K09422 - gmx:100782089 353.984