Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00030 ATGGAGCAGGAAGAGCATGAAGTATACGGTGCAGACATTCCCGACGAGGAGGTTGACATGGACGCCGACGCCGACCAACAAGACGACCAACTTCCCTCCAATCACACAACCAAGGAATTGGAGGATATGAGGAAGAGGCTGAAGGAGATCGAGGAAGAAGCTAGCGCGCTTCGCGAAATGCAGGCCAAGGTTGAAAAAGAGATGGGAGCTGTTCAAGATTCGTCTGGTCCATCTGCAACTCAAGCTGAAAAGGAAGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTTACCATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAATTTGTGGAGATTGATGCAGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTAAAGGTCTCAGCCAAGCGTACAAACGTTCCTGGAATGAAGCAGTATTATGGCAGAAGGCCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCTTTCCACCGTATAGTTATGGAAGGGTTCCAAGGTATAGAAGACCCACACGATACAGGCCATACTAG 645 0.4729 MEQEEHEVYGADIPDEEVDMDADADQQDDQLPSNHTTKELEDMRKRLKEIEEEASALREMQAKVEKEMGAVQDSSGPSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPAPFFPPYSYGRVPRYRRPTRYRPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00030 214 MobiDBLite consensus disorder prediction 1 26 - -
Vium4284g00030 214 FunFam Polyadenylate-binding protein 1 84 170 - -
Vium4284g00030 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Vium4284g00030 214 SMART rrm1_1 91 162 IPR000504 GO:0003723
Vium4284g00030 214 MobiDBLite consensus disorder prediction 65 86 - -
Vium4284g00030 214 MobiDBLite consensus disorder prediction 1 43 - -
Vium4284g00030 214 Gene3D - 11 172 IPR012677 -
Vium4284g00030 214 CDD RRM_II_PABPs 91 162 - -
Vium4284g00030 214 SUPERFAMILY RNA-binding domain, RBD 78 187 IPR035979 GO:0003676
Vium4284g00030 214 Coils Coil 33 67 - -
Vium4284g00030 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Vium4284g00030 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 21 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00030 Vium-Chr4284 196538 204259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00030 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 3.39e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00030 K14396 - gmx:100527545 360.147