Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00011 ATGAACAATGAGGATCCTGGCATTTCAGGCAAACAATATATAGATGCGGTGAATTTTGGTTTAGGCAACCAAATCTCTTCTGCTGAGGATGGACATGACATATGTTACCAAACGGGTGAAGAGTTTTCTGCGGAGTTCTTACGTGATCGAGTTGCCTTAAGAAGAATTCCTGTCATAACTGACACAGACATGCGTCTGCCAAACAGATTGGATGTTAACATTAATGATAATAATTGTCAGTTGGTTTATGAGGATCTAAAGCATGCTCTCGGGCTAAGGAGAGCAGATTCAGATGATAACTCGGATTTGTCAGAGTTTGCATTTGCCAGAGGATGTGTTGGTGAAGTTGACAACAGGACCTATCCTAATAATTTGAACAGATACCAGTTTGAACAAGGTGGTATCAGACAAGTATCAGGTACATTTTCTAAACAACTATCAGGTAACTTTTCGGAGGGAAGTGGTGGTGATCAAGTTAATTCAGGACCAAATACTTCATCTATGTACGTGGACTCACCTCAATCATACCATCCTTATGCATCAGTATTCACAGAAGGTTCTTTCTACAAGAAGATAAAGTTTCTTTGTAGCTTTGGAGGTAGAATACTACCAAGACCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACACGGATAATATCAATTAGGAAGAGCATCGCATGGGAGGAACTTATGAGGAAGACTTCTGCTATCTGCAGTCAAACTCACACTATAAAGTACCAGCTTCCTGGAGAGGACCTTGATGCTCTTATATCTGTTTGTTCCAACGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTTGAAAGAGCTGGAGCCTCTCAACGGCTAAGGATTTTTCTCATCCCTTTAAATGAATGTGAGAGTTCAAGTTCCAATGAAGCAATAGTCAATCAGCAAAGTGATGCGGATTATCATTATGTTGTTGCTGTTAACAGTATGCTGGATCCAAGTCCACAACAGAGTTCCAGTGGGCGAAGTTTAGCAAGCCATACAAGCCAATTTGGAAATACCATTGATTACAACAGTCCACATTTTCACAGAGACTCATCCACATCTGCATTTGCTTCAGATATTAAAGACTTTACCCCAACCTCTCCAAATTTTGCAGGCCTACTCTCAAAACCCAGTCCTCAATATTTTACGGCCCTAGCTGGCCAGACATTCAATCAAATGCCTCATTTACCTGCTCTTTGTGATCCCCAAAATTCTAATGGACAGCTATTTATGGATAAACCATATAATGCTATGAATGAAAGCATTACTCCCTTTGTTACGGAAAAAGTTCCACATGACAATACTCTGTATGTAGACAATGGCAATTATGTTGATCCAGTTGCATTCTATAACAATCTTGCTCAAGGGCATAGACGCGTGAATTACCATCCTAATAATCAATATATAAGGGAGTCTGACCAGATCAGGAGGCCTCGTGAGAATCTTCATCTTCACAGACATAACAGAAGCAACGATTTTGTCTCTTCTGCAACATGTAATCTAAATATTCCGAGTTATGAGAGACCTTTAATTACCAGTGATGGTTCATATCATTTTAACAATATTGTCTCTCATCCTCACGAGTCTCCAAGTTTATTGTCAGAATCTGATCCTAGAGAGGGTTCTCGGTACACAATGTTGCATGCACACTCTGACTCAACACTTAATGAGAATGATGAGAACAGTAAGGCCCACTTGCTATTTCCCCGCAATGTAGAGAGAGACAATTTTCCATCACGAAAAAATTCAAGTCATTTAGAAGAATATTCATTACAGCCTGGAGAGATAATTGATAGGAAAGAGCACCTGGCTAAGTATCAAAATTTGCCCATTTTTGGAATGACTGATAGCTATAAGAAAGTTTTAGATATTGGTAAAGAGAACTTGCAACATGCAGAAAAGAACAATGATTTCTTTGGTGAAACGAACAATGCCATAGATTTTAAACATTTACAGCACATCTACACTCCACATGGTGTTTGTTCATCTTCTCCAGATTTACAGAGAAGTGAATGCAATGCATCTACTGAGTCATTTGTCTCTCTCGAATCCCCAATAAACCTGAGGGGGCAAACAAGTGTGGTACAATTAGACAGAGCCACTTCTGAGCTTTCCATGAGGAGCCAAAATTCATCAAAAATGCATCACCAATATCCTATGTCTGTGGCAAAAGACAGTCAACCACTTTTCCCTGGCCCTTTTAAGTCCCAAAAGGACAAAGAATCCTCATTACCTATCTCATATATGGACATGATTTCTTCCCAAAGAGAGGTTGCTGTCCCTGTCGGAGATCCTGCGTACTACCTGCACCAGAAGGAAGAAAACACAATCATTGAGAATCGGTCTTCTGAAAATATTGATGAATTCTGTGTCAACAGGCCAGTGTCTGATTCCAAGGGACCTAAAGATTCTATTTCTTCGGGTATCCAGTCATGCTTAAAAGTTGTCTCGAATGTAGATGAAAAGGTTGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGATAGAATGTGGTAGTCCAGAATCTGAAAGTAAGCATGCAAGGCCTGATAGTGGAAACATCAACAAGTCTACTGGTGATCGAGCAACTGCTGAAATAGAGTCTGAAATTTATGGATTACAGAATATTGAAAATGATGATCTTGAAGAAATGCAAGAGTTGGGATCTGGAACCTTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGCAGCTGTTTCTCGGGTAGATTGTCAGAGCAAGAGCGGTTGATTAAGGATTTTTGGAGGGAGGCACAGATTCTGTCAACTCTTCACCATCCAAATGTGGTAGCGTTTTATGGGGTAGTTCCAAACGGCCCCGGTGGAACACTGGCAACAGTAACGGAATACATGGTGCATGGATCACTCAAGAGTGTTCTCATGAAGAGGGAAAAGTAA 2967 0.4034 MNNEDPGISGKQYIDAVNFGLGNQISSAEDGHDICYQTGEEFSAEFLRDRVALRRIPVITDTDMRLPNRLDVNINDNNCQLVYEDLKHALGLRRADSDDNSDLSEFAFARGCVGEVDNRTYPNNLNRYQFEQGGIRQVSGTFSKQLSGNFSEGSGGDQVNSGPNTSSMYVDSPQSYHPYASVFTEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKSIAWEELMRKTSAICSQTHTIKYQLPGEDLDALISVCSNEDLHHMIEEYEELERAGASQRLRIFLIPLNECESSSSNEAIVNQQSDADYHYVVAVNSMLDPSPQQSSSGRSLASHTSQFGNTIDYNSPHFHRDSSTSAFASDIKDFTPTSPNFAGLLSKPSPQYFTALAGQTFNQMPHLPALCDPQNSNGQLFMDKPYNAMNESITPFVTEKVPHDNTLYVDNGNYVDPVAFYNNLAQGHRRVNYHPNNQYIRESDQIRRPRENLHLHRHNRSNDFVSSATCNLNIPSYERPLITSDGSYHFNNIVSHPHESPSLLSESDPREGSRYTMLHAHSDSTLNENDENSKAHLLFPRNVERDNFPSRKNSSHLEEYSLQPGEIIDRKEHLAKYQNLPIFGMTDSYKKVLDIGKENLQHAEKNNDFFGETNNAIDFKHLQHIYTPHGVCSSSPDLQRSECNASTESFVSLESPINLRGQTSVVQLDRATSELSMRSQNSSKMHHQYPMSVAKDSQPLFPGPFKSQKDKESSLPISYMDMISSQREVAVPVGDPAYYLHQKEENTIIENRSSENIDEFCVNRPVSDSKGPKDSISSGIQSCLKVVSNVDEKVEVEPTSPEKEGIECGSPESESKHARPDSGNINKSTGDRATAEIESEIYGLQNIENDDLEEMQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLIKDFWREAQILSTLHHPNVVAFYGVVPNGPGGTLATVTEYMVHGSLKSVLMKREK 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00011 988 PANTHER OS05G0427100 PROTEIN-RELATED 172 471 - -
Vium4284g00011 988 ProSitePatterns Protein kinases ATP-binding region signature. 895 916 IPR017441 GO:0005524
Vium4284g00011 988 Gene3D - 210 292 - -
Vium4284g00011 988 Pfam PB1 domain 207 290 IPR000270 GO:0005515
Vium4284g00011 988 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 882 976 - -
Vium4284g00011 988 SUPERFAMILY Protein kinase-like (PK-like) 878 985 IPR011009 -
Vium4284g00011 988 CDD PB1_UP2 195 291 - -
Vium4284g00011 988 MobiDBLite consensus disorder prediction 831 869 - -
Vium4284g00011 988 MobiDBLite consensus disorder prediction 147 169 - -
Vium4284g00011 988 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 211 293 - -
Vium4284g00011 988 Gene3D Phosphorylase Kinase; domain 1 882 977 - -
Vium4284g00011 988 ProSiteProfiles Protein kinase domain profile. 889 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4284g00011 988 SUPERFAMILY CAD & PB1 domains 207 300 - -
Vium4284g00011 988 SMART PB1_new 206 293 IPR000270 GO:0005515
Vium4284g00011 988 MobiDBLite consensus disorder prediction 831 858 - -
Vium4284g00011 988 Pfam Protein tyrosine and serine/threonine kinase 890 986 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00011 Vium-Chr4284 43564 49740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00011 839 988 MAP Kinase Kinase Kinase AT1G04700 66.000 3.03e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium4284g00011 PK_Tyr_Ser-Thr 3.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00011 - - gmx:100807361 1461.05