Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4284g00010 ATGAACAATGAGGATCCTGGCATTTCAGGCAAACAATATATAGATGCGGTGAATTTTGGTTTAGGCAACCAAATCTCTTCTGCTGAGGATGGACATGACATATGTTACCAAACGGGTGAAGAGTTTTCTGCGGAGTTCTTACGTGATCGAGTTGCCTTAAGAAGAATTCCTGTCATAACTGACACAGACATGCGTCTGCCAAACAGATTGGATGTTAACATTAATGATAATAATTGTCAGTTGGTTTATGAGGATCTAAAGCATGCTCTCGGGCTAAGGAGAGCAGATTCAGATGATAACTCGGATTTGTCAGAGTTTGCATTTGCCAGAGGATGTGTTGGTGAAGTTGACAACAGGACCTATCCTAATAATTTGAACAGATACCAGTTTGAACAAGGTGGTATCAGACAAGTATCAGGTACATTTTCTAAACAACTATCAGGTAACTTTTCGGAGGGAAGTGGTGGTGATCAAGTTAATTCAGGACCAAATACTTCATCTATGTACGTGGACTCACCTCAATCATACCATCCTTATGCATCAGTATTCACAGAAGGTTCTTTCTACAAGAAGATAAAGTTTCTTTGTAGCTTTGGAGGTAGAATACTACCAAGACCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACACGGATAATATCAATTAGGAAGAGCATCGCATGGGAGGAACTTATGAGGAAGACTTCTGCTATCTGCAGTCAAACTCACACTATAAAGTACCAGCTTCCTGGAGAGGACCTTGATGCTCTTATATCTGTTTGTTCCAACGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTTGAAAGAGCTGGAGCCTCTCAACGGCTAAGGATTTTTCTCATCCCTTTAAATGAATGTGAGAGTTCAAGTTCCAATGAAGCAATAGTCAATCAGCAAAGTGATGCGGATTATCATTATGTTGTTGCTGTTAACAGTATGCTGGATCCAAGTCCACAACAGAGTTCCAGTGGGCGAAGTTTAGCAAGCCATACAAGCCAATTTGGAAATACCATTGATTACAACAGTCCACATTTTCACAGAGACTCATCCACATCTGCATTTGCTTCAGATATTAAAGACTTTACCCCAACCTCTCCAAATTTTGCAGGCCTACTCTCAAAACCCAGTCCTCAATATTTTACGGCCCTAGCTGGCCAGACATTCAATCAAATGCCTCATTTACCTGCTCTTTGTGATCCCCAAAATTCTAATGGACAGCTATTTATGGATAAACCATATAATGCTATGAATGAAAGCATTACTCCCTTTGTTACGGAAAAAGTTCCACATGACAATACTCTGTATGTAGACAATGGCAATTATGTTGATCCAGTTGCATTCTATAACAATCTTGCTCAAGGGCATAGACGCGTGAATTACCATCCTAATAATCAATATATAAGGGAGTCTGACCAGATCAGGAGGCCTCGTGAGAATCTTCATCTTCACAGACATAACAGAAGCAACGATTTTGTCTCTTCTGCAACATGTAATCTAAATATTCCGAGTTATGAGAGACCTTTAATTACCAGTGATGGTTCATATCATTTTAACAATATTGTCTCTCATCCTCACGAGTCTCCAAGTTTATTGTCAGAATCTGATCCTAGAGAGGGTTCTCGGTACACAATGTTGCATGCACACTCTGACTCAACACTTAATGAGAATGATGAGAACAGTAAGGCCCACTTGCTATTTCCCCGCAATGTAGAGAGAGACAATTTTCCATCACGAAAAAATTCAAGTCATTTAGAAGAATATTCATTACAGCCTGGAGAGATAATTGATAGGAAAGAGCACCTGGCTAAGTATCAAAATTTGCCCATTTTTGGAATGACTGATAGCTATAAGAAAGTTTTAGATATTGGTAAAGAGAACTTGCAACATGCAGAAAAGAACAATGATTTCTTTGGTGAAACGAACAATGCCATAGATTTTAAACATTTACAGCACATCTACACTCCACATGGTGTTTGTTCATCTTCTCCAGATTTACAGAGAAGTGAATGCAATGCATCTACTGAGTCATTTGTCTCTCTCGAATCCCCAATAAACCTGAGGGGGCAAACAAGTGTGGTACAATTAGACAGAGCCACTTCTGAGCTTTCCATGAGGAGCCAAAATTCATCAAAAATGCATCACCAATATCCTATGTCTGTGGCAAAAGACAGTCAACCACTTTTCCCTGGCCCTTTTAAGTCCCAAAAGGACAAAGAATCCTCATTACCTATCTCATATATGGACATGATTTCTTCCCAAAGAGAGGTTGCTGTCCCTGTCGGAGATCCTGCGTACTACCTGCACCAGAAGGAAGAAAACACAATCATTGAGAATCGGTCTTCTGAAAATATTGATGAATTCTGTGTCAACAGGCCAGTGTCTGATTCCAAGGGACCTAAAGATTCTATTTCTTCGGGTATCCAGTCATGCTTAAAAGTTGTCTCGAATGTAGATGAAAAGGTTGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGATAGAATGTGGTAGTCCAGAATCTGAAAGTAAGCATGCAAGGCCTGATAGTGGAAACATCAACAAGTCTACTGGTGATCGAGCAACTGCTGAAATAGAGTCTGAAATTTATGGATTACAGAATATTGAAAATGATGATCTTGAAGAAATGCAAGAGTTGGGATCTGGAACCTTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGCAGCTGTTTCTCGGGTAGATTGTCAGAGCAAGAGCGGTTGATTAAGGATTTTTGGAGGGAGGCACAGATTCTGTCAACTCTTCACCATCCAAATGTGGTAGCGTTTTATGGGGTAGTTCCAAACGGCCCCGGTGGAACACTGGCAACAGTAACGGAATACATGGTGCATGGATCACTCAAGAGTGTTCTCATGAAGAGGGAAAAAGTGCTTGACCGTCGTAAAAGGGTCCTAATAGCAATGGATGCAGCCTTTGGGATGGAATATTTGCATTTGAAGAATATTGTTCATTTTGATTTAAAGTGTGATAATTTACTTGTCAATCTGGGCGATCCTGAACGACCTGTATGCAAGGTTGGAGATTTTGGCCTATCCAGAATAAAACGTAATACACTTGTTTCAGGTGGTGTCCGAGGAACCCTTCCATGGATGGCACCTGAATTACTGGATGGTAACAGTTGTAGGGTATCTGAGAAGGTTGATATTTTCTCATTTGGCATTGTAATGTGGGAAATCTTGACTGGGGAAGAACCATATGCTAACATGCACTGTGGCGCTATTATAGGAGGTATTGTCAATAATACGCTCAGGCCTCCTATTCCAAAAAGATGTGATTCTGAGTGGAAAAGGCTGATGGAAGAGTGCTGGAGTCCTGATCCTGCAGCAAGACCAACCTTCACAGATATTAAAATTAGACTTCGCAACATATCAGCTGCACTTCCCAAAAAGAGACATAACATTGGCAATCGATGA 3510 0.4057 MNNEDPGISGKQYIDAVNFGLGNQISSAEDGHDICYQTGEEFSAEFLRDRVALRRIPVITDTDMRLPNRLDVNINDNNCQLVYEDLKHALGLRRADSDDNSDLSEFAFARGCVGEVDNRTYPNNLNRYQFEQGGIRQVSGTFSKQLSGNFSEGSGGDQVNSGPNTSSMYVDSPQSYHPYASVFTEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKSIAWEELMRKTSAICSQTHTIKYQLPGEDLDALISVCSNEDLHHMIEEYEELERAGASQRLRIFLIPLNECESSSSNEAIVNQQSDADYHYVVAVNSMLDPSPQQSSSGRSLASHTSQFGNTIDYNSPHFHRDSSTSAFASDIKDFTPTSPNFAGLLSKPSPQYFTALAGQTFNQMPHLPALCDPQNSNGQLFMDKPYNAMNESITPFVTEKVPHDNTLYVDNGNYVDPVAFYNNLAQGHRRVNYHPNNQYIRESDQIRRPRENLHLHRHNRSNDFVSSATCNLNIPSYERPLITSDGSYHFNNIVSHPHESPSLLSESDPREGSRYTMLHAHSDSTLNENDENSKAHLLFPRNVERDNFPSRKNSSHLEEYSLQPGEIIDRKEHLAKYQNLPIFGMTDSYKKVLDIGKENLQHAEKNNDFFGETNNAIDFKHLQHIYTPHGVCSSSPDLQRSECNASTESFVSLESPINLRGQTSVVQLDRATSELSMRSQNSSKMHHQYPMSVAKDSQPLFPGPFKSQKDKESSLPISYMDMISSQREVAVPVGDPAYYLHQKEENTIIENRSSENIDEFCVNRPVSDSKGPKDSISSGIQSCLKVVSNVDEKVEVEPTSPEKEGIECGSPESESKHARPDSGNINKSTGDRATAEIESEIYGLQNIENDDLEEMQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLIKDFWREAQILSTLHHPNVVAFYGVVPNGPGGTLATVTEYMVHGSLKSVLMKREKVLDRRKRVLIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIVMWEILTGEEPYANMHCGAIIGGIVNNTLRPPIPKRCDSEWKRLMEECWSPDPAARPTFTDIKIRLRNISAALPKKRHNIGNR 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4284g00010 1169 ProSitePatterns Protein kinases ATP-binding region signature. 895 916 IPR017441 GO:0005524
Vium4284g00010 1169 Gene3D Phosphorylase Kinase; domain 1 882 976 - -
Vium4284g00010 1169 SUPERFAMILY CAD & PB1 domains 207 300 - -
Vium4284g00010 1169 Gene3D - 210 292 - -
Vium4284g00010 1169 Gene3D Transferase(Phosphotransferase) domain 1 977 1167 - -
Vium4284g00010 1169 PANTHER SERINE-THREONINE PROTEIN KINASE 236 1151 - -
Vium4284g00010 1169 Pfam PB1 domain 207 290 IPR000270 GO:0005515
Vium4284g00010 1169 PRINTS Tyrosine kinase catalytic domain signature 1123 1145 IPR001245 GO:0004672|GO:0006468
Vium4284g00010 1169 PRINTS Tyrosine kinase catalytic domain signature 971 984 IPR001245 GO:0004672|GO:0006468
Vium4284g00010 1169 PRINTS Tyrosine kinase catalytic domain signature 1079 1101 IPR001245 GO:0004672|GO:0006468
Vium4284g00010 1169 PRINTS Tyrosine kinase catalytic domain signature 1008 1026 IPR001245 GO:0004672|GO:0006468
Vium4284g00010 1169 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 882 976 - -
Vium4284g00010 1169 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 211 293 - -
Vium4284g00010 1169 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1014 1026 IPR008271 GO:0004672|GO:0006468
Vium4284g00010 1169 SMART serkin_6 889 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4284g00010 1169 CDD STKc_MAP3K-like 895 1148 - -
Vium4284g00010 1169 CDD PB1_UP2 195 291 - -
Vium4284g00010 1169 Pfam Protein tyrosine and serine/threonine kinase 890 1149 IPR001245 GO:0004672|GO:0006468
Vium4284g00010 1169 MobiDBLite consensus disorder prediction 831 869 - -
Vium4284g00010 1169 MobiDBLite consensus disorder prediction 147 169 - -
Vium4284g00010 1169 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 977 1168 - -
Vium4284g00010 1169 SUPERFAMILY Protein kinase-like (PK-like) 877 1149 IPR011009 -
Vium4284g00010 1169 ProSiteProfiles Protein kinase domain profile. 889 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4284g00010 1169 SMART PB1_new 206 293 IPR000270 GO:0005515
Vium4284g00010 1169 MobiDBLite consensus disorder prediction 831 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4284g00010 Vium-Chr4284 43564 51280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4284g00010 37 323 MAP Kinase Kinase Kinase AT1G16270 39.236 4.09e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium4284g00010 PK_Tyr_Ser-Thr 1.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4284g00010 - - gmx:100810711 1815.82