Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4283g00005 ATGAGTATGCCTATGTCAATCACACTCTTTCTTCTACCATTATTGTATTTCCAACTTTCATCATCTTCTTCATCATCCCTGACAATGGGCTCTTCCCTCTCTGTGGAAAATCCACACCATATTCTCATCTCACCAAACGCCATCTTTTCTGCTGGCTTTTTAGCCATTGGTGACAACGCATATTCATTTGCAATATGGTTCACGGAGCCTCATTTTCACAGCCCAACTTCTGTCACATGGATGGCAAACCGTGACCAACCTGTCAATGGAAAAAGCTCCAAACTTTCCCTCACAAACGATGGCAACATGGTCTTGATTGATGCTGCTCTTAACATTGCTTGGTCTTCAAACACTGCTTCATCAGCCCCAGTGGAGTTGCATCTCAAAGATGATGGCAATCTAGTGTTACGCCATCTTCAAGGAACCGTACTGTGGCAAAGTTTCGATTTTCCAACCGACACTCTCGTTCCTGGTCAGCCTCTAACAAGATATACGCAACTTGTGTCTTCAAGAAGCGAGAGTAACCATTCCTCAGGTTTCTATAAGTTTTTCTTCGATGATGACAACGTTCTTGGTCTTCATTACGATGGTCCTGATGTTTCAAGCTCCTACTGGCCACAACCTTGGTTGATAAGTTGGGATGCTGGAAGGACTAATTTCAACAGTACTAGAATTGGCGTGTTGAATTCTCTGGGACTTTTCAGTTCAACAGATAATTTCACTTTCGTGACATCTGATTACGGAACAGTGCTGCAGAGAAGGTTGAAAGTGGATTGTGATGGCAATGTTCGAGTGTACAGTCGAAATAATGTTTTGCAGAAGTGGTATGTTTCATGGCAAGCAATTTCTAGTGGTTGCATATCTCATGGGATTTGTGGAACCAACAGCTTCTGCACTTACGTTCCTAAGAGTGGAAGAAAATGTTTGTGTCTTCCGGGGCATAGATTGAAGAACCACAGTGATTGGTCTGAAGGGTGTGAACCCTTGTTTCAGCTTACTTGCCATAGGAATGAGTCTATGTTCTTGGAAATTCGAAATGTTGAGTTTTATGGCTATGATAATCATTATGTAGAAGTCAGTAACTATAGTGCCTGTGAGAATTTATGCTTGCAAGACTGCAGTTGTAAGGGGTTTCAGCACTCCTATAGTGATGATAAACCATTTTATAGGTGCTATACGAAAACGCAATTGCTCAATGGAAGACGTTCACCGGTATTCCAAGGAGCAACATACCTTAGATTTCCCAAAAGTAATAGCTTCTCTCACAAAGAACATGCCAGCGAACCTTTATATGATCATGTTTGTTCAGTTCAACTTCAAAGAGATTATATCAAATCACAAGGAAACCATTTTGTGAAGATTTTCCTGTGGTTTTCCACCGCCCTTGGAGCTTTTGAAGTGATTTGCATTGTTTTGATTTGGTGTCTAGTTAGGACCAGACAAAAGTCTAACGTTGATCGAGAGGGCTACCATCTTGCAGAAACAGGATTCAGAAAATATAGTTATTCAGAGTTGAAAAAGGCGACAAAGGGGTTCAGTGAAGAGATCGGAAGGGGTGCGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTGAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTCAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAATATATGGAGAATGGTTCTTTGGCACAAAATCTGTCATCCAACACTCTTGATTGGAGTAAGAGATATAACATTGCCCTTGGAACTGCAAGAGTTCTGGCATATCTTCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAGAACATACTTCTTGACGCTAATTATCAACCCAAGGTAGCAGATTTTGGCCTGTCGAAGCTCCTGAAGAGAGGTAATAAGCTCAGCAATTCAAGCATCTCTATGATCAGAGGGACGAGAGGATATATAGCACCTGAATGGGTTTTTAACTTGCCAATCACATCGAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTAACTGGGAAAAGCACAACAAGAAGTATCCATGATGATGAAGAAAGATATGATGGGAGGGTGGTGGAATGGGTGAGAGAGAAAAAGGGAAACAGTAGTAACTCATATTGGGTGGAGGAGATAATTGCACCTGATATTGGAGCTGATTATGATCACAGGAAGATGGAAATTCTGTGTACAGTGGCTTTGAACTGTGTCATGGAAGACAGAGATTCTAGGCCCACCATGAGCCAAGTCGTTGAGATGCTTCAGTGA 2361 0.4159 MSMPMSITLFLLPLLYFQLSSSSSSSLTMGSSLSVENPHHILISPNAIFSAGFLAIGDNAYSFAIWFTEPHFHSPTSVTWMANRDQPVNGKSSKLSLTNDGNMVLIDAALNIAWSSNTASSAPVELHLKDDGNLVLRHLQGTVLWQSFDFPTDTLVPGQPLTRYTQLVSSRSESNHSSGFYKFFFDDDNVLGLHYDGPDVSSSYWPQPWLISWDAGRTNFNSTRIGVLNSLGLFSSTDNFTFVTSDYGTVLQRRLKVDCDGNVRVYSRNNVLQKWYVSWQAISSGCISHGICGTNSFCTYVPKSGRKCLCLPGHRLKNHSDWSEGCEPLFQLTCHRNESMFLEIRNVEFYGYDNHYVEVSNYSACENLCLQDCSCKGFQHSYSDDKPFYRCYTKTQLLNGRRSPVFQGATYLRFPKSNSFSHKEHASEPLYDHVCSVQLQRDYIKSQGNHFVKIFLWFSTALGAFEVICIVLIWCLVRTRQKSNVDREGYHLAETGFRKYSYSELKKATKGFSEEIGRGAGGVVYKGILSDERHAAIKRLNEAEQGEGEFLAEVSIIGRLNHMNLIQMWGYCAEGKHRLLVYEYMENGSLAQNLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLKRGNKLSNSSISMIRGTRGYIAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSTTRSIHDDEERYDGRVVEWVREKKGNSSNSYWVEEIIAPDIGADYDHRKMEILCTVALNCVMEDRDSRPTMSQVVEMLQ 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4283g00005 786 SMART serkin_6 510 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00005 786 Gene3D - 19 149 IPR036426 -
Vium4283g00005 786 Pfam Protein kinase domain 513 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00005 786 SMART blect_4 30 151 IPR001480 -
Vium4283g00005 786 FunFam Putative receptor-like protein kinase 585 786 - -
Vium4283g00005 786 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Vium4283g00005 786 Pfam D-mannose binding lectin 78 163 IPR001480 -
Vium4283g00005 786 Pfam PAN-like domain 334 396 IPR003609 -
Vium4283g00005 786 PANTHER OS07G0415500 PROTEIN 4 786 - -
Vium4283g00005 786 ProSiteProfiles Protein kinase domain profile. 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00005 786 PIRSF SRK 1 786 IPR024171 GO:0004674
Vium4283g00005 786 CDD B_lectin 42 151 IPR001480 -
Vium4283g00005 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Vium4283g00005 786 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 167 IPR036426 -
Vium4283g00005 786 ProSiteProfiles Bulb-type lectin domain profile. 18 149 IPR001480 -
Vium4283g00005 786 Gene3D Hepatocyte Growth Factor 340 422 - -
Vium4283g00005 786 Gene3D Phosphorylase Kinase; domain 1 475 584 - -
Vium4283g00005 786 Gene3D Transferase(Phosphotransferase) domain 1 585 786 - -
Vium4283g00005 786 Pfam S-locus glycoprotein domain 239 317 IPR000858 GO:0048544
Vium4283g00005 786 FunFam S-receptor-like serine/threonine-protein kinase 479 584 - -
Vium4283g00005 786 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Vium4283g00005 786 SUPERFAMILY Protein kinase-like (PK-like) 489 785 IPR011009 -
Vium4283g00005 786 CDD PAN_AP_plant 330 415 - -
Vium4283g00005 786 CDD STKc_IRAK 516 786 - -
Vium4283g00005 786 FunFam Putative receptor protein kinase ZmPK1 21 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4283g00005 Vium-Chr4283 107237 109765 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4283g00005 500 785 Trihelix Transcription Factor Family AT5G38560 40.411 6.21e-62 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4283g00005 Pkinase 1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4283g00005 - - gmx:100783758 1236.09