Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4283g00003 ATGTATTTCCAGCGTTCATCTTCTTCATCATCCTTGAGAATGGGTTCTTCCCTCTCTGTGGAAAATCCACACCATATTCTCATCTCACCAAACGCCATCTTTTCTGCAGGCTTTATAGCCGTTGGTGAGAACGCATATTCATTTGCAATATGGTTCACAGAGCCTCATTTTCACAGCCCCAGCACTGTCACATGGATGGCAAACCGTGATCAACCTGTCAATGGAAAACGCTCCAAAATTTCCCTCACAAACGATGGCAACGTTGTCTTAGTTGATGCTTCTTACAACACTGCTTGGTCTTCAAACACCGATTCGTTAGACCCAGTAGAGTTGCATCTCAGAGACGACGGTAATCTAGTGTTACGCCAGCTTCAAGGAACCGTTCTGTGGCAAAGTTTCGATTTTCCGACCGACACTCTCGTTCCTGGTCAGCCTCTTACCAGATACACACATCTTTTGTCTTCAAGAAGCCACACTAACCATTCATCTGGTTTCTACAAGCTGTATTTCGGCGATGATAACATTCTTCGTCTTCTATATGATGGCCCTGATGTTTCAAGCTCCTACTGGCCTAGTCCCTATCGTGTAAGTTGGGATGTTGGTAGAACTTTATTCAATAGCAGTAGAATTGCTGTGTTGAATTCTTTTGGGAGAAGGTTGAAACTGGACCCTGATGGTAATTTCCGAGTGTATAGTCGAAATAGTGTGTTAGAGAAGTGGTATGTTTCGTGGCAAGCAATTACTAATGGCTGCCAGATTCATGGGGTTTGTGGAGCCAACAGCACGTGTGCTTATGATCACGAGAGGGGGAAAAAGTGTGAGTGTCTTCCAGGGTACAGATGGAACAACCTCAGTGATTGGTCTCATGGGTGTAAGCCCATGTTTGATCTCACCTGCGATCAGAATGAGTCTACCTTCTTGGAGATGCAGGGTGTGGAATTTTACGGGTATGATTTTTATTATGTAGAAGTTAGTAATTTTACGGCTTGTGAGAAACTGTGCTTGCAAAATTGTAGTTGTGTAGGGTTTCAGCACTCCTATACTGACAAAAAGGGCATAGCCTTCAAGTGTTATACCAAAACACAATTGCTCAACGGAAGGCGTTTACCCAGATTCACAGGAACAACATACTTGAGAGTGACCAAAGGTTATACGTTCTCTGTGAAAGAATCTTCTACTGACAGTGCACATGTTCTTCGAGTTTGTTCAGTTCAACTTCAAAGAGATTATGTAAAGTCACACGGAAGCCGTATTGTGATTGTTTTTCTGTGGTTTGCTTCCGCACTTGGAGCTTTTGAAATGGTTTGTGCTTTCGTGATTTGGTGCTTCCTAATTAGAACCAACCGAAAGTCTAATGCAGATCAAAAGGGGTACCATCTTACAGCAACGGGATTCAGAAAATTTAGCTACTCCGAGTTGAAAAAGGCTACAAAGGGGTTCAGTAAGGAGATTGGAAGAGGTGGGGGAGGGGTTGTGTACGAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTAAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCCTCATTGGAAAGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCACAAAATCTTTCATCCAACTCCCTTGATTGGAGTATGAGATACAACATTGCAATTGGAACTGCAAGAGTTCTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAATATACTTTTAGATTCCAATTATGAGCCAAAGTTAGCAGACTTTGGCTTGTCGAAGCTCCTCAACAGAAACAACCCCAACAATCCAAGCATCTCTATGATCAGAGGGACCAGAGGGTATATGGCACCAGAGTGGGTTCTTAACTTGCCAATCACATCCAAGGTGGATGTTTATAGTTATGGAATTGTTGTTTTGGAACTGGTAACTGGAAAAAGCACAAGTGTCCAAGAAATTGATGGTGGAGAGACATATGATGGGAGGCTAGTGGCATGGGTGAGAGAAAAAAGAAGCAACACCAACTCAGATTGGGTGGAACAAATAGTTGAACCTGCTATTGGACCTGATTATGATAGAAGTAAGATGGAAATGTTGGCAACAGTGGCTTTGAACTGTGTAATGGAAGACAGAGATTCAAGGCCTACCATGAGCCAAGTAGTTGAGATGCTTCAAGGTCATGGAAGTGAATCTGATCAATGA 2283 0.4258 MYFQRSSSSSSLRMGSSLSVENPHHILISPNAIFSAGFIAVGENAYSFAIWFTEPHFHSPSTVTWMANRDQPVNGKRSKISLTNDGNVVLVDASYNTAWSSNTDSLDPVELHLRDDGNLVLRQLQGTVLWQSFDFPTDTLVPGQPLTRYTHLLSSRSHTNHSSGFYKLYFGDDNILRLLYDGPDVSSSYWPSPYRVSWDVGRTLFNSSRIAVLNSFGRRLKLDPDGNFRVYSRNSVLEKWYVSWQAITNGCQIHGVCGANSTCAYDHERGKKCECLPGYRWNNLSDWSHGCKPMFDLTCDQNESTFLEMQGVEFYGYDFYYVEVSNFTACEKLCLQNCSCVGFQHSYTDKKGIAFKCYTKTQLLNGRRLPRFTGTTYLRVTKGYTFSVKESSTDSAHVLRVCSVQLQRDYVKSHGSRIVIVFLWFASALGAFEMVCAFVIWCFLIRTNRKSNADQKGYHLTATGFRKFSYSELKKATKGFSKEIGRGGGGVVYEGILSDERHAAIKRLNEAKQGEGEFLAEVSLIGKLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAQNLSSNSLDWSMRYNIAIGTARVLAYLHEECLEWILHCDIKPQNILLDSNYEPKLADFGLSKLLNRNNPNNPSISMIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLELVTGKSTSVQEIDGGETYDGRLVAWVREKRSNTNSDWVEQIVEPAIGPDYDRSKMEMLATVALNCVMEDRDSRPTMSQVVEMLQGHGSESDQ 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4283g00003 760 Gene3D - 5 135 IPR036426 -
Vium4283g00003 760 Gene3D Hepatocyte Growth Factor 307 390 - -
Vium4283g00003 760 Pfam PAN-like domain 299 362 IPR003609 -
Vium4283g00003 760 SMART serkin_6 478 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00003 760 CDD STKc_IRAK 484 753 - -
Vium4283g00003 760 PANTHER OS07G0415500 PROTEIN 6 755 - -
Vium4283g00003 760 Pfam S-locus glycoprotein domain 216 280 IPR000858 GO:0048544
Vium4283g00003 760 Pfam D-mannose binding lectin 62 148 IPR001480 -
Vium4283g00003 760 ProSiteProfiles Bulb-type lectin domain profile. 3 134 IPR001480 -
Vium4283g00003 760 SMART blect_4 15 136 IPR001480 -
Vium4283g00003 760 Gene3D Transferase(Phosphotransferase) domain 1 553 760 - -
Vium4283g00003 760 CDD B_lectin 27 136 IPR001480 -
Vium4283g00003 760 FunFam Putative receptor protein kinase ZmPK1 6 135 - -
Vium4283g00003 760 SUPERFAMILY Protein kinase-like (PK-like) 457 751 IPR011009 -
Vium4283g00003 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Vium4283g00003 760 Pfam Protein kinase domain 481 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00003 760 FunFam S-receptor-like serine/threonine-protein kinase 447 552 - -
Vium4283g00003 760 Gene3D Phosphorylase Kinase; domain 1 443 552 - -
Vium4283g00003 760 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 179 IPR036426 -
Vium4283g00003 760 ProSiteProfiles Protein kinase domain profile. 478 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00003 760 PIRSF SRK 1 760 IPR024171 GO:0004674
Vium4283g00003 760 FunFam Putative receptor-like protein kinase 553 758 - -
Vium4283g00003 760 ProSitePatterns Protein kinases ATP-binding region signature. 484 506 IPR017441 GO:0005524
Vium4283g00003 760 ProSiteProfiles PAN/Apple domain profile. 299 382 IPR003609 -
Vium4283g00003 760 CDD PAN_AP_plant 295 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4283g00003 Vium-Chr4283 87813 90155 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4283g00003 406 751 Receptor kinase-like Gene Family AT3G58690 36.043 5.99e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4283g00003 Pkinase 8.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4283g00003 - - vra:106758305 1507.27