Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4283g00001 ATGGGTTTCTCAATCTCACTCTTTTTCCTTCTCTTGCCTCTTTCTTTTCAGTCTTCATCTTCCCTCTCCTCGTTGAACAAGGGGTCCTCTCTCTCAGTGGAGAAACAAGCACAACACTTTATTCTCTCACCTAATCAAATGTTTTGTGCTGGTTTCTTTCAAGTTGGCGAAAATGCTTTCTCCTTTGGCATATGGTTCAACGATCCTCACTCTCACAACCCCATCAATGTGGTTTGGATGGCAAACCGTGATCAACCCGTAAATGGGAAGCTCTCAAAGCTTTCTCTTTTGAACAGTGGTAACATCGTCTTGGTTGATGCTGGTCAAATCACCACTTGGTCATCAAAAACAGAATCACATGCCCCAGTAAAGTTGCATCTCCAAGATGATGGTAATCTTGTGCTAGATGAGCCCCAAGGAACCATTTTGTGGCAAAGTTTTGATTTTCCAACGGATACTCTGCTTCCTGATCAACCTCTTACCAGATTCACACAACTTGTGTCTTCAAGAAGCTTCACAAATCATTCCTCTGGCTTCTATAAGCTGCTATTTGACGATAACAATGTTCTTAGTCTCATTTATGATGGCCCTGATGTTTCAAGCACATACTGGCCTCCCCCTTGGCTACTCAGTTGGCAAGCTGGAAGATTTAATTACAATAGCAGCAGAGTTGCAGTGTTCAATTCTCTTGGCAGTTTCCTTTCATCAGATAATTATGCTTTTTCCACCTATGATAACGGCACGGTTATGCCCAGAAGATTAACACTGGACTCTGATGGTAACGTTCGTATGTACTCTAGAAATGAGGCTTTGAAGAAATGGTACGTTTCCTGGCAATTCATATTTGATACTTGCAGCATTCATGGGATTTGTGGAGCTAACACCACTTGCAGCTTTGATCCTGAAAGGGGAAGGAGATGCTCGTGTTTACCGGGATACAGAGTGAAAAACCGTAGTGATTGGTCTTACGGGTGTGAACCCTTGTTTGATATTACTTGCAATAGAAATGAGTCTACCTTTTTAGAGATACAGGGCGTTGAGTTATATGGCTATGATCATAATTTTATCCAAAACAGTACGTACATGAACTGTTTGAATTTGTGCTTGCAAGATTGTAACTGCAAAGGGTTTCAGTATAGATATGATGAGGGGCAAGGATTTAGCTGCTACACAAAGTTACAGTTGAGGAATGGAAGGCATTCACCAGGATTTAGTGGAACAATTTCGCTGAGACTGCCAAAAGGAAATAACTTCTCCAAGGAGGAATCTGTGAGAGCAGAAGATCATGTTTGTTTGGTGCAGCTTCAAAAGGGCTATGTTACAAAACCAGAAAATCGTTATGTGAGATTCTTTTTGTGGTTTGCTACTGCAGTTGGAGTTTTAGAATTGATTTGTCTTTCCATGGTTTGGGGTTTCTTGACGAGGACGCGCCAAAAGTCTAGTGCAGATCAACAAGGGTACCATGTTGCTGCAGTGGGAGTTAGAAAATATAGTTATTCAGAGTTGAAGAAGGCGACGAAGGGGTTCAGTGAAGAGATTGGAAGGGGTGGAGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTAAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAAAAAATCTCTCATCCAACTCTCTTGATTGGAGTAAGAGATACAACATTGCCCTTGGAACTGCAAGAGTTCTGGCATATCTTCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAGAACATACTTCTTGACGCTAATTATCAACCCAAGGTAGCAGATTTTGGGCTATCGAAGCTAGTGAACAGGAACAACCTGAATAACAGTTCAAGGTTTTCAATGATAAGAGGAACAAGAGGGTACATGGCACCTGAGTGGGTTTACAATTTACCAATCACTTCGAAAGTGGATGTTTACAGCTACGGAATTGTTCTTCTGGAGATGGTAACTGGAAAAAGTCCAACAATTGGCGTTCAAAGCATTGATGGAGAAGAATCATACAATGGAAGGTTGGTAACATGGGTGAAAGAGAAAAGGAGTGGCACCTACTCCTCTTGGCTGGAACAAATCATTAATCCTGCAATTGAAACAAACTACAATAAATTTAAGATGGACCTTTTGGTTACAGTGGCTTTGGCTTGTGTTGAGGAAAGTAAAGATTTGAGACCCACCATGAGTCAAGTTGTCGAAATGCTTCAAAGCCATGAAAGTAACCCTAAATCATAA 2379 0.4128 MGFSISLFFLLLPLSFQSSSSLSSLNKGSSLSVEKQAQHFILSPNQMFCAGFFQVGENAFSFGIWFNDPHSHNPINVVWMANRDQPVNGKLSKLSLLNSGNIVLVDAGQITTWSSKTESHAPVKLHLQDDGNLVLDEPQGTILWQSFDFPTDTLLPDQPLTRFTQLVSSRSFTNHSSGFYKLLFDDNNVLSLIYDGPDVSSTYWPPPWLLSWQAGRFNYNSSRVAVFNSLGSFLSSDNYAFSTYDNGTVMPRRLTLDSDGNVRMYSRNEALKKWYVSWQFIFDTCSIHGICGANTTCSFDPERGRRCSCLPGYRVKNRSDWSYGCEPLFDITCNRNESTFLEIQGVELYGYDHNFIQNSTYMNCLNLCLQDCNCKGFQYRYDEGQGFSCYTKLQLRNGRHSPGFSGTISLRLPKGNNFSKEESVRAEDHVCLVQLQKGYVTKPENRYVRFFLWFATAVGVLELICLSMVWGFLTRTRQKSSADQQGYHVAAVGVRKYSYSELKKATKGFSEEIGRGGGGVVYKGILSDERHAAIKRLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAKNLSSNSLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLVNRNNLNNSSRFSMIRGTRGYMAPEWVYNLPITSKVDVYSYGIVLLEMVTGKSPTIGVQSIDGEESYNGRLVTWVKEKRSGTYSSWLEQIINPAIETNYNKFKMDLLVTVALACVEESKDLRPTMSQVVEMLQSHESNPKS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4283g00001 792 SMART serkin_6 507 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00001 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 193 IPR036426 -
Vium4283g00001 792 FunFam Serine/threonine-protein kinase 582 791 - -
Vium4283g00001 792 FunFam Serine/threonine-protein kinase 151 278 - -
Vium4283g00001 792 CDD PAN_AP_plant 329 413 - -
Vium4283g00001 792 CDD B_lectin 40 150 IPR001480 -
Vium4283g00001 792 FunFam Putative receptor protein kinase ZmPK1 19 149 - -
Vium4283g00001 792 PANTHER OS07G0415500 PROTEIN 4 787 - -
Vium4283g00001 792 Gene3D Transferase(Phosphotransferase) domain 1 582 792 - -
Vium4283g00001 792 SMART blect_4 32 150 IPR001480 -
Vium4283g00001 792 ProSiteProfiles PAN/Apple domain profile. 333 423 IPR003609 -
Vium4283g00001 792 ProSiteProfiles Bulb-type lectin domain profile. 16 148 IPR001480 -
Vium4283g00001 792 CDD STKc_IRAK 513 784 - -
Vium4283g00001 792 SUPERFAMILY Protein kinase-like (PK-like) 485 784 IPR011009 -
Vium4283g00001 792 PIRSF SRK 1 792 IPR024171 GO:0004674
Vium4283g00001 792 ProSiteProfiles EGF-like domain profile. 281 319 IPR000742 -
Vium4283g00001 792 Gene3D Phosphorylase Kinase; domain 1 471 581 - -
Vium4283g00001 792 Pfam D-mannose binding lectin 77 162 IPR001480 -
Vium4283g00001 792 Pfam Protein kinase domain 510 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00001 792 Pfam PAN-like domain 333 392 IPR003609 -
Vium4283g00001 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Vium4283g00001 792 Pfam S-locus glycoprotein domain 226 316 IPR000858 GO:0048544
Vium4283g00001 792 ProSiteProfiles Protein kinase domain profile. 507 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4283g00001 792 FunFam S-receptor-like serine/threonine-protein kinase 476 581 - -
Vium4283g00001 792 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Vium4283g00001 792 Gene3D - 18 149 IPR036426 -
Vium4283g00001 792 Gene3D - 150 275 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4283g00001 Vium-Chr4283 4462 7051 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4283g00001 497 787 Trihelix Transcription Factor Family AT5G38560 43.000 9.55e-66 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4283g00001 Pkinase 5.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4283g00001 - - gmx:100785351 1276.92