Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4280g00011 ATGGCTCCAAAGAAGGACAAGGCTCCCCCACCTTCATCAAAGCCCGCCAAGTCTGGCGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAATAACATGGTGCTGTTTGATCAGGGTACCTATGACAAGCTTCTCTCCGAGGCACCAAAATACAAGCTTATTACTCCAGCCATTCTCTCTGATCGTCTTAGGATTAATGGATCACTTGCAAGGAAGGCTATACGGGAATTGATGGCTAGAGGTTCAATCAGGATGGTGTCTGCCCATGCAAGTCAGCAGATTTACACTAGAGCTACAAACACCTAG 327 0.474 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKYKLITPAILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4280g00011 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Vium4280g00011 108 MobiDBLite consensus disorder prediction 1 36 - -
Vium4280g00011 108 FunFam 40S ribosomal protein S25 21 108 - -
Vium4280g00011 108 Gene3D - 21 108 - -
Vium4280g00011 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4280g00011 Vium-Chr4280 24068 25963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4280g00011 1 107 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 91.589 4.09e-55 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4280g00011 K02975 - gmx:100499810 160.999